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Migrate to 1.4.0

Reset ontologies

Modifications have been made to the core ontologies in this version. You will need to update the ontologies on your triple store :

java -jar opensilex.jar --CONFIG_FILE=<config_file> sparql reset-ontologies

Data Insertion

  • The POST /core/data service ("Add data") now use a limit of 10000 element instead of 50000 element.

Update Java 17

Please install java 17. We recommend using sdkman kit which make it easier to switch between different Java versions, but you can also use your preferred installation method.

If you need to execute java version 11, you can build the project using profile -Pfor-java-11 (Ex mvn clean install -Pfor-java-11)

RDF4J migration

Migrate RDF4J from 3.7.4 to 5.0.3 by following the migration guide.

If you create your new repository in version 5.0.3 manually, please create an LMDB repository instead of a memory or native store. This allows for much better performance on a lot of queries.

Migration execution:

# Connect to a console in OpenSILEX server
# From the directory which contains your OpenSILEX executable .jar file
java -jar opensilex.jar --CONFIG_FILE=<config_file> system run-update org.opensilex.migration.UpdateSitesWithLocationObservationCollectionModel

See the migration org.opensilex.migration.UpdateSitesWithLocationObservationCollectionModel from migration_command.md for additional notes