diff --git a/assets/AboutView-4f5f7638.js b/assets/AboutView-a80c5c70.js
similarity index 99%
rename from assets/AboutView-4f5f7638.js
rename to assets/AboutView-a80c5c70.js
index 4f1468c..d8d0604 100644
--- a/assets/AboutView-4f5f7638.js
+++ b/assets/AboutView-a80c5c70.js
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similarity index 99%
rename from assets/DesignView-457e6eb7.js
rename to assets/DesignView-84e20c42.js
index d4c7500..b0f155f 100644
--- a/assets/DesignView-457e6eb7.js
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diff --git a/assets/DownloadView-9674c2af.js b/assets/DownloadView-39cc97ec.js
similarity index 99%
rename from assets/DownloadView-9674c2af.js
rename to assets/DownloadView-39cc97ec.js
index 547abb2..5a5bba9 100644
--- a/assets/DownloadView-9674c2af.js
+++ b/assets/DownloadView-39cc97ec.js
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(①更新部分应用的代码和参数，如CorPlot, PCAPlot, TSNEPlot等；②修复部分应用由于数据库导致的运行问题。).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.5"),e("b",null,"Date: 2023-03-20"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/D72wOFkjTfWJAwWd9vkWlw",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/D72wOFkjTfWJAwWd9vkWlw"),t(),e("br")]),e("p",null,[e("b",null,"New Feature:"),t(" 1.1 ① Reduce the color, tone and transparency of all UI interfaces of the program; (2) optimize the description of parameters, especially the input file type and upload mode, such as the sequence input is mainly in Fasta format, which supports pasting sequence and uploading sequence files, the table data is mainly in Txt text tab format, which supports button upload and drag, and the single-cell Cellrange/Visium large data file mainly uses the specified file path. ③ Add references to all programs (published articles or R citation) (①降低程序所有UI界面的颜色色调和透明度；②优化参数说明，尤其是输入文件类型和上传方式，如序列输入主要以Fasta格式，支持粘贴序列和上传序列文件，表格数据主要以Txt文本制表符格式，支持按钮上传和拖拽方式，单细胞Cellrange/Visium大型数据文件主要以指定文件路径即可等；③所有程序添加参考文献（发表文章或R引用方式）).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 Introduce the 30+Shiny framework program I developed and optimized before through Java encryption code (通过Java加密代码方式引入我之前开发并优化的30+Shiny框架程序).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Solve the adaptation problem of some users due to the screen resolution of notebook or desktop computer (解决部分用户由于笔记本或台式电脑屏幕分辨率的适配问题).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.4"),e("b",null,"Date: 2023-03-04"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/mvkuJv95T8wsFcxK6_NDxg",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/mvkuJv95T8wsFcxK6_NDxg"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 Add the OpenExample button at the bottom of the table window for all programs, which is convenient for users to find the program sample data and prepare the data structure suitable for the program according to the sample data (为所有程序在表格窗口下方添加OpenExample按钮，方便用户找到程序示例数据，并根据示例数据准备适合程序的数据结构).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 There are three new procedures for genome gene density and two/three genome collinearity analysis in Genomics genome classification, including genome density, digenomesynty and trigenomesynty.")]),e("p",null,[e("b",null,"New App:"),t(" 2.2 Six programs related to differentially expressed genes and KEGG Pathway visualization (`mversusa (maplot), upset, PathwayNativeSinglesmaple, PathwayNativeMultisample, PathwayGraphvizsingle, PathwayGraphvizmulti') in the Transcriptomics classification.")]),e("p",null,[e("b",null,"New App:"),t(" 2.3 Eight Metabolomics programs based on the original analysis of LC-MS mass spectrometry data mzML have been added to the metabolomics metabolomics classification, including metabomZML, metabomHeatmap, metaboroi, metabobasepeakion, metabotaliochrom, metabopeakintensity, metabopeakrt and metabopeakanno.")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Solve the analysis process interruption and task failure caused by Chinese user names of some users. This update will be suitable for most Windows computer environments (解决部分用户由于中文用户名导致的分析进程中断及任务失败，此次更新将适合于大多数Windows电脑环境).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.3"),e("b",null,"Date: 2023-02-26"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/dYfH83mEccsLyeCoMLzoRw",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/dYfH83mEccsLyeCoMLzoRw"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(' 1.1 This update beautifies the startup interface and the "OmicsSuite" on the Home page, classifies and counts Echarts (此次更新美化启动界面和Home页面的`OmicsSuite`所有程序分类和统计Echarts).')]),e("p",null,[e("b",null,"New App:"),t(" 2.1 SingleCell classification of' Singlecell' is related to single cell differentiation trajectory ('monocle umap, monocle marker, monocle trajectories') and single cell spatial transcriptome ('spatial feature, spatial gene, spatial umap, spatialtsne, SpatialAirClusterMaker, SpatialAllClusterMaker, Spatial Slice`) a total of 10 programs.")]),e("p",null,[e("b",null,"New App:"),t(" 2.2 Six programs related to differentially expressed genes and KEGG Pathway visualization (`mversusa (maplot), upset, PathwayNativeSinglesmaple, PathwayNativeMultisample, PathwayGraphvizsingle, PathwayGraphvizmulti') in the Transcriptomics classification.")]),e("p",null,[e("b",null,"New App:"),t(" 2.3 Seven programs related to the operation of `sequences` nucleotide sequence or amino acid sequence (`seqslength, seqsheartail, seqsslice, seqsgc, seqstranslate, seqpalindrome, pairwise alignment').")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Fix the problem of slow loading of CDN when accessing the right sidebar page (修复右侧边栏页面访问时CDN加载缓慢的问题).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.2"),e("b",null,"Date: 2023-02-19"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/quZ2bNI6ZUYu8_Gjrua4RQ",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/quZ2bNI6ZUYu8_Gjrua4RQ"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 Fixed slow loading of animation in startup interface (修复启动界面的动画加载缓慢).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 Update the data analysis program of single cell conventional transcriptome (SingleCell RNA-Seq) based on the output of 10X Genomics sequencing CellRange. Many programs mainly refer to 10X Genomics data format and Seurat data analysis flow, allowing users to perform data QC, cell filtering, mitochondrial gene proportion statistics, Feature filtering, hypervariable Feature identification, PCA analysis and JackStraw's selection of PCA, cell UMAP/TSNE clustering, Marker gene selection of all Cluster, and output visual results and corresponding tabular data in all analyses. The update procedures are as follows: update Heatmap and CircosHeatmap in Algorithm classification, update feature QC, feature filter, feature variable, feature PCA, PCA Jack Straw, Cell Umap, Celtsne in SingleCell classification, MarkerViolin, MarkerUMAP, MarkerHeatmap, CellAnnotation (更新带来基于10X Genomics测序CellRange输出结果的单细胞常规转录组(SingleCell RNA-Seq)数据分析程序。多个程序主要参考10X Genomics数据格式和Seurat数据分析流程，允许用户执行数据QC、细胞过滤、线粒体基因占比统计、Feature过滤、高变Feature鉴定、PCA分析及JackStraw对PCA的选择、细胞UMAP/TSNE聚类、所有Cluster的Marker基因选择，所有分析中输出可视化结果和对应的表格数据。更新程序如下：Algorithm分类中更新Heatmap、CircosHeatmap，SingleCell分类中更新FeatureQC, FeatureFilter, FeatureVariable, FeaturePCA, PCAJackStraw, CellUMAP, CellTSNE, MarkerViolin, MarkerUMAP, MarkerHeatmap, CellAnnotation).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Fixed slow loading of animation in startup interface (修复启动界面的动画加载缓慢).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.1"),e("b",null,"Date: 2023-01-07"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/j12ysJWhZYpXruF1r50rKA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/j12ysJWhZYpXruF1r50rKA"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 Optimize and update tool drawer category columns and icons (优化和更新工具抽屉分类栏目和图标).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 Add nearly 30 omics-related programs such as HG 19 Gene EXP, HG 19 Gene Marker, Chloroplast Genome, Mito Genome, Maftitv, Mafachange, Mafomatic Interaction, etc (新增HG19GeneExp, HG19GeneMarker, ChloroplastGenome, MitoGenome, MafTiTv, MafAAChange, MafSomaticInteraction等近30个组学相关的程序).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Fix the flashing of the main page to make the program load more smoothly (修复主页面画面闪动，使得程序加载更加流畅).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.0"),e("b",null,"Date: 2022-12-07"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/eHK8ILEzsjTWQCQyIYCMMQ",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/eHK8ILEzsjTWQCQyIYCMMQ"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 The main purpose of updating the interface of OmicsSuiteUI is to make the program simpler, more comfortable and more modern. I also examined my own aesthetic standards through continuous exploration, and finally found that a good interface needs clear logic, simple and comfortable interface (更新OmicsSuiteUI界面主要为了使得程序更加简约、舒服、现代化，我也是在不断探索中审视自己的审美观，最终发现好的界面需要逻辑清晰、界面简约舒适).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 The newly added Apps mainly include barstat, scatterplot, groupline, quantile q (QQ), density normal, boxstat, violinstat, piestat, dounstat, and Seq Motif in Sequence category (新增Apps主要包括Statistics分类中的BarStat, ScatterPlot, GroupLine, QuantileQ(QQ), DensityNormal, BoxStat, ViolinStat, PieStat, DountStat，以及Sequence分类中的Seq Motif程序).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Temporarily shut down the use of Shiny Apps program, and the code logic and security problems are still being solved (暂时关闭Shiny Apps程序的使用，代码逻辑和安全问题仍然在解决).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.5"),e("b",null,"Date: 2022-10-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/38rDWcsIxTIRgbPNCudhaw",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/38rDWcsIxTIRgbPNCudhaw"),t(),e("br")]),e("p",null,[e("b",null,"New Features:"),t(" 1.1 New courses and feedback section (新增课程与反馈板块).")]),e("p",null,[e("b",null,"New Features:"),t(" 1.2 New Shiny programs, such as Network Shiny, WGCNA Shiny and Community Shiny (新增Shiny程序，如Network Shiny、WGCNA Shiny、Community Shiny).")]),e("p",null,[e("b",null,"New Features:"),t(" 1.3 Re-adjust the layout and beautification of the program interface (重新调整程序界面布局和美化).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.4"),e("b",null,"Date: 2022-10-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/YeYZ-M-QCwr18Vc6Quytzg",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/YeYZ-M-QCwr18Vc6Quytzg"),t(),e("br")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 1.0 This update is an emergency update, which mainly solves the fatal problem that many researchers can't start after installing OmicsSuite recently. ① This problem is not caused by Java and R environment. The program comes with a compressed version of JDK-11 environment, so users don't need to install any version of Java themselves. ② This problem is mainly due to the regional shielding of specific domain names in https://api.github.com. Therefore, this update mainly solves the problem that the API in the function is automatically requested to be updated when the program is started, and the program can be started and run under any circumstances of networking or disconnection after the update (此次更新属于紧急更新，主要解决近期以来不少科研者遇到安装OmicsSuite后无法启动的致命问题。①该问题不是由于Java和R环境导致，程序自带压缩版本的JDK-11环境，用户无须自己安装任何版本的Java。②该问题主要由于区域对https://api.github.com特定域名的屏蔽，因此此次更新主要解决由于程序启动时自动请求更新函数中的API，更新后可在联网或断网的任何情况下启动并运行程序).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.3"),e("b",null,"Date: 2022-09-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/yNleCDhdfmmFiv97LrRWlA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/yNleCDhdfmmFiv97LrRWlA"),t(),e("br")]),e("p",null,[e("b",null,"New Feature:"),t(" 1.0 The color of the beautified menu bar after expansion is light blue with a little bit of technological style, and the transparency with shadows is set to be similar to the ground glass effect. The drop position of the menu bar is designed to be 5px, and all submenu bars are designed to be rounded rectangles (美化菜单栏展开后的颜色为淡蓝色带有些许科技风，并设置带有阴影的透明度类似毛玻璃效果，设计菜单栏下落位置为5px以及设计所有子菜单栏为圆角矩形).")]),e("p",null,[e("b",null,"New Feature:"),t(" 2.0 The native Choicebox selection box is designed as a rounded rectangle, and the drop-down selection box is designed as transparent light blue (将原生自带的Choicebox选择框设计为圆角矩形，及将下拉选择框设计为透明淡蓝色).")]),e("p",null,[e("b",null,"New Feature:"),t(" 3.0 Each category of the toolbox is added with a corresponding color icon, and the number of programs label is added (工具箱每个分类增加对应的彩色图标，并增加程序数量标签).")]),e("p",null,[e("b",null,"New Feature:"),t(" 4.0 Light blue glow is added to all tool cards on the home page to show the scientific trend and add a light red background to the labels of tool cards (首页所有Tool Cards添加淡蓝色辉光，展示科技风，为工具卡片的标签添加淡红色背景).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite: v1.2.2"),e("b",null,"Date: 2022-09-28"),t(),e("br"),e("b",null,"Update:"),t(),e("a",{href:"https://mp.weixin.qq.com/s/LIjTmbgKWQJe9nSfX2wi0w",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/LIjTmbgKWQJe9nSfX2wi0w"),t(),e("br"),e("p",null,[e("b",null,"New App:"),t(" 1.0 Ribosome 16S DNA Mindmap (微生物原核核糖体16S DNA即扩增子测序流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 2.0 Metagenome Illumina Mindmap (微生物基于Illumina平台宏基因组测序及分析流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 3.0 Metagenome PacBio Mindmap (微生物基于PacBio平台宏基因组测序及分析流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 4.0 Glycometabolism Mindmap (糖代谢的复杂过程网络的思维导图).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite: Version 1.2.1"),e("b",null,"Date: 2022-09-27"),t(),e("br"),e("b",null,"Update:"),t(),e("a",{href:"https://mp.weixin.qq.com/s/ulDSHmqwGC30eP8EXqh5yA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/ulDSHmqwGC30eP8EXqh5yA"),t(),e("br"),e("p",null,[e("b",null,"New Features:"),t(" 1.0 Complete the window and content of "),e("b",null,"Help -> HelpDoc"),t(". 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Many programs mainly refer to 10X Genomics data format and Seurat data analysis flow, allowing users to perform data QC, cell filtering, mitochondrial gene proportion statistics, Feature filtering, hypervariable Feature identification, PCA analysis and JackStraw's selection of PCA, cell UMAP/TSNE clustering, Marker gene selection of all Cluster, and output visual results and corresponding tabular data in all analyses. The update procedures are as follows: update Heatmap and CircosHeatmap in Algorithm classification, update feature QC, feature filter, feature variable, feature PCA, PCA Jack Straw, Cell Umap, Celtsne in SingleCell classification, MarkerViolin, MarkerUMAP, MarkerHeatmap, CellAnnotation (更新带来基于10X Genomics测序CellRange输出结果的单细胞常规转录组(SingleCell RNA-Seq)数据分析程序。多个程序主要参考10X Genomics数据格式和Seurat数据分析流程，允许用户执行数据QC、细胞过滤、线粒体基因占比统计、Feature过滤、高变Feature鉴定、PCA分析及JackStraw对PCA的选择、细胞UMAP/TSNE聚类、所有Cluster的Marker基因选择，所有分析中输出可视化结果和对应的表格数据。更新程序如下：Algorithm分类中更新Heatmap、CircosHeatmap，SingleCell分类中更新FeatureQC, FeatureFilter, FeatureVariable, FeaturePCA, PCAJackStraw, CellUMAP, CellTSNE, MarkerViolin, MarkerUMAP, MarkerHeatmap, CellAnnotation).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Fixed slow loading of animation in startup interface (修复启动界面的动画加载缓慢).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.1"),e("b",null,"Date: 2023-01-07"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/j12ysJWhZYpXruF1r50rKA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/j12ysJWhZYpXruF1r50rKA"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 Optimize and update tool drawer category columns and icons (优化和更新工具抽屉分类栏目和图标).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 Add nearly 30 omics-related programs such as HG 19 Gene EXP, HG 19 Gene Marker, Chloroplast Genome, Mito Genome, Maftitv, Mafachange, Mafomatic Interaction, etc (新增HG19GeneExp, HG19GeneMarker, ChloroplastGenome, MitoGenome, MafTiTv, MafAAChange, MafSomaticInteraction等近30个组学相关的程序).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Fix the flashing of the main page to make the program load more smoothly (修复主页面画面闪动，使得程序加载更加流畅).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.3.0"),e("b",null,"Date: 2022-12-07"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/eHK8ILEzsjTWQCQyIYCMMQ",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/eHK8ILEzsjTWQCQyIYCMMQ"),t(),e("br")]),e("p",null,[e("b",null,"UI Design:"),t(" 1.1 The main purpose of updating the interface of OmicsSuiteUI is to make the program simpler, more comfortable and more modern. I also examined my own aesthetic standards through continuous exploration, and finally found that a good interface needs clear logic, simple and comfortable interface (更新OmicsSuiteUI界面主要为了使得程序更加简约、舒服、现代化，我也是在不断探索中审视自己的审美观，最终发现好的界面需要逻辑清晰、界面简约舒适).")]),e("p",null,[e("b",null,"New App:"),t(" 2.1 The newly added Apps mainly include barstat, scatterplot, groupline, quantile q (QQ), density normal, boxstat, violinstat, piestat, dounstat, and Seq Motif in Sequence category (新增Apps主要包括Statistics分类中的BarStat, ScatterPlot, GroupLine, QuantileQ(QQ), DensityNormal, BoxStat, ViolinStat, PieStat, DountStat，以及Sequence分类中的Seq Motif程序).")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 3.1 Temporarily shut down the use of Shiny Apps program, and the code logic and security problems are still being solved (暂时关闭Shiny Apps程序的使用，代码逻辑和安全问题仍然在解决).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.5"),e("b",null,"Date: 2022-10-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/38rDWcsIxTIRgbPNCudhaw",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/38rDWcsIxTIRgbPNCudhaw"),t(),e("br")]),e("p",null,[e("b",null,"New Features:"),t(" 1.1 New courses and feedback section (新增课程与反馈板块).")]),e("p",null,[e("b",null,"New Features:"),t(" 1.2 New Shiny programs, such as Network Shiny, WGCNA Shiny and Community Shiny (新增Shiny程序，如Network Shiny、WGCNA Shiny、Community Shiny).")]),e("p",null,[e("b",null,"New Features:"),t(" 1.3 Re-adjust the layout and beautification of the program interface (重新调整程序界面布局和美化).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.4"),e("b",null,"Date: 2022-10-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/YeYZ-M-QCwr18Vc6Quytzg",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/YeYZ-M-QCwr18Vc6Quytzg"),t(),e("br")]),e("p",null,[e("b",null,"Bug Fixed:"),t(" 1.0 This update is an emergency update, which mainly solves the fatal problem that many researchers can't start after installing OmicsSuite recently. ① This problem is not caused by Java and R environment. The program comes with a compressed version of JDK-11 environment, so users don't need to install any version of Java themselves. ② This problem is mainly due to the regional shielding of specific domain names in https://api.github.com. Therefore, this update mainly solves the problem that the API in the function is automatically requested to be updated when the program is started, and the program can be started and run under any circumstances of networking or disconnection after the update (此次更新属于紧急更新，主要解决近期以来不少科研者遇到安装OmicsSuite后无法启动的致命问题。①该问题不是由于Java和R环境导致，程序自带压缩版本的JDK-11环境，用户无须自己安装任何版本的Java。②该问题主要由于区域对https://api.github.com特定域名的屏蔽，因此此次更新主要解决由于程序启动时自动请求更新函数中的API，更新后可在联网或断网的任何情况下启动并运行程序).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite-v1.2.3"),e("b",null,"Date: 2022-09-30"),t(),e("br"),e("b",null,[t("Update: "),e("a",{href:"https://mp.weixin.qq.com/s/yNleCDhdfmmFiv97LrRWlA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/yNleCDhdfmmFiv97LrRWlA"),t(),e("br")]),e("p",null,[e("b",null,"New Feature:"),t(" 1.0 The color of the beautified menu bar after expansion is light blue with a little bit of technological style, and the transparency with shadows is set to be similar to the ground glass effect. The drop position of the menu bar is designed to be 5px, and all submenu bars are designed to be rounded rectangles (美化菜单栏展开后的颜色为淡蓝色带有些许科技风，并设置带有阴影的透明度类似毛玻璃效果，设计菜单栏下落位置为5px以及设计所有子菜单栏为圆角矩形).")]),e("p",null,[e("b",null,"New Feature:"),t(" 2.0 The native Choicebox selection box is designed as a rounded rectangle, and the drop-down selection box is designed as transparent light blue (将原生自带的Choicebox选择框设计为圆角矩形，及将下拉选择框设计为透明淡蓝色).")]),e("p",null,[e("b",null,"New Feature:"),t(" 3.0 Each category of the toolbox is added with a corresponding color icon, and the number of programs label is added (工具箱每个分类增加对应的彩色图标，并增加程序数量标签).")]),e("p",null,[e("b",null,"New Feature:"),t(" 4.0 Light blue glow is added to all tool cards on the home page to show the scientific trend and add a light red background to the labels of tool cards (首页所有Tool Cards添加淡蓝色辉光，展示科技风，为工具卡片的标签添加淡红色背景).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite: v1.2.2"),e("b",null,"Date: 2022-09-28"),t(),e("br"),e("b",null,"Update:"),t(),e("a",{href:"https://mp.weixin.qq.com/s/LIjTmbgKWQJe9nSfX2wi0w",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/LIjTmbgKWQJe9nSfX2wi0w"),t(),e("br"),e("p",null,[e("b",null,"New App:"),t(" 1.0 Ribosome 16S DNA Mindmap (微生物原核核糖体16S DNA即扩增子测序流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 2.0 Metagenome Illumina Mindmap (微生物基于Illumina平台宏基因组测序及分析流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 3.0 Metagenome PacBio Mindmap (微生物基于PacBio平台宏基因组测序及分析流程的思维导图).")]),e("p",null,[e("b",null,"New App:"),t(" 4.0 Glycometabolism Mindmap (糖代谢的复杂过程网络的思维导图).")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite: Version 1.2.1"),e("b",null,"Date: 2022-09-27"),t(),e("br"),e("b",null,"Update:"),t(),e("a",{href:"https://mp.weixin.qq.com/s/ulDSHmqwGC30eP8EXqh5yA",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/ulDSHmqwGC30eP8EXqh5yA"),t(),e("br"),e("p",null,[e("b",null,"New Features:"),t(" 1.0 Complete the window and content of "),e("b",null,"Help -> HelpDoc"),t(". 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The official address for releasing new versions is: https://github.com/OmicsSuite/OmicsSuite.github.io/releases At the same time, this update is version 1.2.0, which means that important functions are new and new.(OmicsSuite此次更新增加了启动程序时自动检测新的稳定版本，新版本释放官方地址为：https://github.com/OmicsSuite/OmicsSuite.github.io/releases，同时此次更新为1.2.0版本，意味着重要功能跟新和新的开始。) ")])]),e("br"),e("div",{style:{"border-radius":"10px",background:"radial-gradient(#00808088 0, #00808033 100%)",padding:"20px","line-height":"20px","font-family":"'SimHei'","font-size":"14px","text-align":"justify"}},[e("h3",null,"OmicsSuite: Version 1.1.3"),e("b",null,"Date: 2022-06-25"),t(),e("br"),e("b",null,"Update:"),t(),e("a",{href:"https://mp.weixin.qq.com/s/Q1Dhy6_vyh4u0pHhTCGI2w",style:{color:"#008000"}},"生物信息学Omics: https://mp.weixin.qq.com/s/Q1Dhy6_vyh4u0pHhTCGI2w"),t(),e("br"),e("p",null,[e("b",null,"New Apps:"),t(" 1.0 ChordPlot (弦图可视化复杂配对关系). 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diff --git a/assets/FriendsView-722cf8ab.js b/assets/FriendsView-6c2a40fe.js
similarity index 99%
rename from assets/FriendsView-722cf8ab.js
rename to assets/FriendsView-6c2a40fe.js
index e23ad2b..d6fb9b5 100644
--- a/assets/FriendsView-722cf8ab.js
+++ b/assets/FriendsView-6c2a40fe.js
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diff --git a/assets/PublishView-419ee65c.js b/assets/PublishView-06d2ce73.js
similarity index 99%
rename from assets/PublishView-419ee65c.js
rename to assets/PublishView-06d2ce73.js
index 31abff2..e1170a1 100644
--- a/assets/PublishView-419ee65c.js
+++ b/assets/PublishView-06d2ce73.js
@@ -1 +1 @@
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",-1)),F=t(()=>e("br",null,null,-1)),z=t(()=>e("div",{class:"image-text-card"},[e("p",{class:"card-title"},"Abstract:"),e("p",{class:"card-content"}," With the advancements in high-throughput sequencing technologies such as Illumina, PacBio, and 10X Genomics platforms, and gas/liquid chromatography-mass spectrometry, large volumes of biological data in multiple formats can now be obtained through multi-omics analysis. Bioinformatics is constantly evolving and seeking breakthroughs to solve multi-omics problems, however it is challenging for most experimental biologists to analyze data using command-line interfaces, coding, and scripting. Based on experience with multi-omics, we have developed OmicsSuite, a desktop suite that comprehensively integrates statistics and multi-omics analysis and visualization. The suite has 175 sub-applications in 12 categories, including Sequence, Statistics, Algorithm, Genomics, Transcriptomics, Enrichment, Proteomics, Metabolomics, Clinical, Microorganism, Single Cell, and Table Operation. We created the user interface with Sequence View, Table View, and intelligent components based on JavaFX and the popular Shiny framework. The multi-omics analysis functions were developed based on BioJava and 300+ packages provided by the R CRAN and Bioconductor communities, and it encompasses over 3,000 adjustable parameter interfaces. OmicsSuite can directly read multi-omics raw data in FastA, FastQ, MAF, mzML, Matrix, and HDF5 formats, and the programs emphasize data transfer directions and pipeline analysis functions. OmicsSuite can produce pre-publication images and tables, allowing users to focus on biological aspects. OmicsSuite offers multi-omics step-by-step workflows that can be easily applied to horticultural plant breeding and molecular mechanism studies in plants. It enables researchers to freely explore the molecular information contained in multi-omics big data (Source: https://github.com/OmicsSuite/, Website: https://omicssuite.github.io, v1.3.9). ")],-1)),G=t(()=>e("br",null,null,-1)),j=t(()=>e("p",{style:{"font-size":"1.2em","font-weight":"bold","text-align":"justify"}},[r("Ben-ben Miao, Wei Dong, Yi-xin Gu, Zhao-fang Han, Xuan Luo, Cai-huan Ke, Wei-wei You, OmicsSuite: a customized and pipelined suite for analysis and visualization of multi-omics big data, "),e("i",null,"Horticulture Research"),r(", 2023;, uhad195, "),e("a",{href:"https://doi.org/10.1093/hr/uhad195",target:"_blank",style:{color:"#008888"}},"https://doi.org/10.1093/hr/uhad195"),r(". 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User Interface:",-1)),X=t(()=>e("p",{class:"card-content"}," OmicsSuite has redesigned the UI of JavaFX to provide a modern and improved operating experience for users. The default layout features a multi-level menu bar at the top of the window, a shortcut access bar at the bottom, a collapsible toolbox on the left, a home page in the middle, and a meta information and version update record panel on the right. When a sub-application is started, the layout will switch to the user interface, with the analysis page of the application in the middle and application details information on the right. ",-1)),E=t(()=>e("img",{src:"https://benben-miao.gitee.io/image-cloud/OmicsSuite/Paper-Figure2.jpg",style:{width:"100%","aspect-ratio":"true","border-radius":"10px"}},null,-1)),N=t(()=>e("br",null,null,-1)),J={class:"image-text-card"},$=t(()=>e("p",{class:"card-title"},"3. 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Omics Transcriptomics:",-1)),se=t(()=>e("p",{class:"card-content"}," VolcanoPlot and MversusA (MAplot) (combined names) can intuitively display the differentially expressed genes between paired groups. ExpressionTrends (Expression Trends) can display the linear trajectories of all genes in multiple groups, making it convenient to observe the expression trends of genes with traits. Similarly, WGCNA performs a weighted gene co-expression network analysis, taking multiple-group gene expression data as input. ",-1)),oe=t(()=>e("img",{src:"https://benben-miao.gitee.io/image-cloud/OmicsSuite/Paper-Figure5.jpg",style:{width:"100%","aspect-ratio":"true","border-radius":"10px"}},null,-1)),ae=t(()=>e("br",null,null,-1)),ne={class:"image-text-card"},le=t(()=>e("p",{class:"card-title"},"6. 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index 36ffc0d..f806f3a 100644
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index db15540..7fde619 100644
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