server.yaml.sample

logging_level: DEBUG
info_log_file: "esm.log"
error_log_file: "esm.error"

api_key: "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" # this is invalid, use your own huggingface access token

intermediate_pdb_path: "./intermediate_pdbs"
cache_db_path: "./pdb_cache.db"

model:
  # name: esm3
  # replica: # specify the GPU device to use, and the number of replicas for each GPU
  #   0: 3
  #   1: 3
  # esm_num_steps: 5

  # name: esmfold
  # replica: # in esmfold case, GPU device can be anything, this will not be read. but replication number should be valid
  #   _: 10

  # name: huggingface_esmfold
  # replica: # specify the GPU device to use, and the number of replicas for each GPU
  #   0: 2
  #   1: 2

  # name: esmfold_hybrid
  # replica: # specify the GPU replica and api replica
  #   0: 3
  #   1: 3
  #   _: 6 # for esmfold api

  name: alphafold3
  replica: # specify the GPU replica and api replica
    6: 14
    7: 14

task_queue_size: 500

timeout: 60.0 # seconds

backbone_pdb:
  reversed_index: "backbone_pdbs/pdb/reversed_index.yaml"
  name_seq_map: "backbone_pdbs/pdb/name_map_map.yaml"
  parquet_prefix: "backbone_pdbs/parquet/protein_backbone_cath_"
  pdb_prefix: "backbone_pdbs/pdb/protein_backbone_cath_"