From f09d41b0127488392ed762e4d5e721b7f75c2911 Mon Sep 17 00:00:00 2001
From: Jamie Gilbert <JGilber2@its.jnj.com>
Date: Mon, 15 Jan 2024 11:07:18 -0800
Subject: [PATCH] Created first draft of study json schema object

---
 inst/analysis-specification-schema.json | 169 ++++++++++++++++++++++++
 1 file changed, 169 insertions(+)
 create mode 100644 inst/analysis-specification-schema.json

diff --git a/inst/analysis-specification-schema.json b/inst/analysis-specification-schema.json
new file mode 100644
index 00000000..ef605ed7
--- /dev/null
+++ b/inst/analysis-specification-schema.json
@@ -0,0 +1,169 @@
+{
+  "$schema": "http://json-schema.org/draft-07/schema#",
+  "type": "object",
+  "properties": {
+    "apiVersion": {
+      "type": "string"
+    },
+    "sharedResources": {
+      "type": "array",
+      "items": {
+        "oneOf": [
+          {
+            "type": "object",
+            "properties": {
+              "cohortDefinitionSet": {
+                "type": "object",
+                "properties": {
+                  "cohortDefinitions": {
+                    "type": "array",
+                    "items": {
+                      "oneOf": [
+                        {
+                          "type": "object",
+                          "properties": {
+                            "_links": {
+                              "type": "object",
+                              "properties": {
+                                "self": {
+                                  "type": "object",
+                                  "properties": {
+                                    "href": {
+                                      "type": "string"
+                                    }
+                                  }
+                                }
+                              },
+                              "required": ["self"]
+                            },
+                            "cohortName": {
+                              "type": "string"
+                            },
+                            "cohortDefinitionId": {
+                              "type": "integer"
+                            }
+                          },
+                          "required": ["_links", "cohortName", "cohortDefinitionId"]
+                        },
+                        {
+                          "type": "object",
+                          "properties": {
+                            "cohortDefinitionId": {"type": "integer"},
+                            "targetCohortDefinitionId": {"type": "integer"},
+                            "subsetDefinitionId": {"type": "integer"},
+                             "cohortName": {
+                              "type": "string"
+                            }
+                          },
+                          "required": ["cohortDefinitionId", "targetCohortDefinitionId", "subsetDefinitionId"]
+                        }
+                      ]
+                    }
+                  },
+                  "subsetDefinitions": {
+                    "type": "array",
+                    "items": {
+                      "type": "object",
+                      "properties": {
+                        "_links": {
+                          "type": "object",
+                          "properties": {
+                            "self": {"type": "object", "properties": {"href": {"type": "string"}}}
+                          },
+                          "required": ["self"]
+                        },
+                        "subsetDefinitionName": {"type": "string"},
+                        "subsetDefinitionId": {"type": "integer"}
+                      },
+                      "required": ["_links", "subsetDefinitionName", "subsetDefinitionId"]
+                    }
+                  }
+                },
+                "required": ["cohortDefinitions", "subsetDefinitions"]
+              }
+            },
+            "required": ["cohortDefinitionSet"]
+          },
+          {
+            "type": "object",
+            "properties": {
+              "conceptSetDefinition": {
+                "type": "object",
+                "properties": {
+                  "id": {"type": "integer"},
+                  "conceptSetName": {"type": "string"},
+                  "isNegativeControlConceptSet": {"type": "boolean"},
+                  "concepts": {
+                    "type": "array",
+                    "items": {
+                      "type": "object",
+                      "properties": {
+                        "conceptId": {"type": "integer"},
+                        "conceptName": {"type": "string"},
+                        "standardConcept": {"type": "boolean"},
+                        "standardConceptCaption": {"type": "string"},
+                        "invalidReason": {"type": "string"},
+                        "invalidReasonCaption": {"type": "string"},
+                        "conceptCode": {"type": "string"},
+                        "domainId": {"type": "integer"},
+                        "vocabularyId": {"type": "integer"},
+                        "conceptClassId": {"type": "integer"},
+                        "validStartDate": {"type": "string", "format": "date"},
+                        "validEndDate": {"type": "string", "format": "date"},
+                        "cohortDefinitionId": {"type": "integer"}
+                      },
+                      "required": ["conceptId", "conceptName", "standardConcept", "standardConceptCaption", "invalidReason", "invalidReasonCaption", "conceptCode", "domainId", "vocabularyId", "conceptClassId", "validStartDate", "validEndDate"]
+                    }
+                  }
+                },
+                "required": ["id", "conceptSetName", "concepts"]
+              }
+            },
+            "required": ["conceptSetDefinition"]
+          },
+          {
+            "type": "object",
+            "properties": {
+              "sharedResource": {
+                "type": "object",
+                "properties": {
+                  "name": {"type": "string"},
+                  "schemaRef": {"type": "string", "format": "uri"}
+                },
+                "required": ["name", "schemaRef"]
+              }
+            },
+            "required": ["sharedResource"]
+          }
+        ]
+      }
+    },
+    "renv": {
+      "type": "object",
+      "properties": {
+        "_links": {
+          "type": "object",
+          "properties": {
+            "self": {"type": "object", "properties": {"href": {"type": "string"}}}
+          },
+          "required": ["self"]
+        }
+      },
+      "required": ["_links"]
+    },
+    "modules": {
+      "type": "array",
+      "items": {
+        "type": "object",
+        "properties": {
+          "module": {"type": "string"},
+          "version": {"type": "string"},
+          "schemaRef": {"type": "string", "format": "uri"},
+          "settings": {"$ref": "#"}
+        },
+        "required": ["module", "version", "schemaRef", "settings"]
+      }
+    }
+  },
+  "required": ["apiVersion", "sharedResources", "renv", "modules"]
+}