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Revert "Add based-on pairs to cob-to-external"
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This reverts commit 26a5f2d.
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@sebastianduesing
sebastianduesing committed Sep 6, 2024
1 parent 26a5f2d commit c1ae393
Showing 1 changed file with 40 additions and 43 deletions.
83 changes: 40 additions & 43 deletions src/ontology/components/cob-to-external.tsv
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#license: "https://creativecommons.org/publicdomain/zero/1.0/"
#mapping_set_id: "http://purl.obolibrary.org/obo/cob/components/cob-to-external.tsv"
#curie_map:
# rdfs: "http://www.w3.org/2000/01/rdf-schema#"
# owl: "http://www.w3.org/2002/07/owl#"
# skos: "http://www.w3.org/2004/02/skos/core#"
# BFO: "http://purl.obolibrary.org/obo/BFO_"
# CARO: "http://purl.obolibrary.org/obo/CARO_"
# CL: "http://purl.obolibrary.org/obo/CL_"
# CHEBI: "http://purl.obolibrary.org/obo/CHEBI_"
# COB: "http://purl.obolibrary.org/obo/COB_"
# ENVO: "http://purl.obolibrary.org/obo/ENVO_"
# GO: "http://purl.obolibrary.org/obo/GO_"
# GEO: "http://purl.obolibrary.org/obo/GEO_"
# IAO: "http://purl.obolibrary.org/obo/IAO_"
# MOP: "http://purl.obolibrary.org/obo/MOP_"
# OBI: "http://purl.obolibrary.org/obo/OBI_"
# NCBITaxon: "http://purl.obolibrary.org/obo/NCBITaxon_"
# OGMS: "http://purl.obolibrary.org/obo/OGMS_"
# PATO: "http://purl.obolibrary.org/obo/PATO_"
# PO: "http://purl.obolibrary.org/obo/PO_"
# PCO: "http://purl.obolibrary.org/obo/PCO_"
# PR: "http://purl.obolibrary.org/obo/PR_"
# SO: "http://purl.obolibrary.org/obo/SO_"
# UBERON: "http://purl.obolibrary.org/obo/UBERON_"
# RO: "http://purl.obolibrary.org/obo/RO_"
# XAO: "http://purl.obolibrary.org/obo/XAO_"
# ZFA: "http://purl.obolibrary.org/obo/ZFA_"
# STATO: "http://purl.obolibrary.org/obo/STATO_"
# SEPIO: "http://purl.obolibrary.org/obo/SEPIO_"
# DRON: "http://purl.obolibrary.org/obo/DRON_"
#license: "https://creativecommons.org/publicdomain/zero/1.0/"
#mapping_set_id: "http://purl.obolibrary.org/obo/cob/components/cob-to-external.tsv"
#curie_map:
# rdfs: "http://www.w3.org/2000/01/rdf-schema#"
# skos: "http://www.w3.org/2004/02/skos/core#"
# owl: "http://www.w3.org/2002/07/owl#"
# BFO: "http://purl.obolibrary.org/obo/BFO_"
# CARO: "http://purl.obolibrary.org/obo/CARO_"
# CHEBI: "http://purl.obolibrary.org/obo/CHEBI_"
# CL: "http://purl.obolibrary.org/obo/CL_"
# COB: "http://purl.obolibrary.org/obo/COB_"
# ENVO: "http://purl.obolibrary.org/obo/ENVO_"
# GEO: "http://purl.obolibrary.org/obo/GEO_"
# GO: "http://purl.obolibrary.org/obo/GO_"
# IAO: "http://purl.obolibrary.org/obo/IAO_"
# MOP: "http://purl.obolibrary.org/obo/MOP_"
# NCBITaxon: "http://purl.obolibrary.org/obo/NCBITaxon_"
# OBI: "http://purl.obolibrary.org/obo/OBI_"
# OGMS: "http://purl.obolibrary.org/obo/OGMS_"
# PATO: "http://purl.obolibrary.org/obo/PATO_"
# PCO: "http://purl.obolibrary.org/obo/PCO_"
# PO: "http://purl.obolibrary.org/obo/PO_"
# PR: "http://purl.obolibrary.org/obo/PR_"
# SO: "http://purl.obolibrary.org/obo/SO_"
# RO: "http://purl.obolibrary.org/obo/RO_"
# UBERON: "http://purl.obolibrary.org/obo/UBERON_"
# XAO: "http://purl.obolibrary.org/obo/XAO_"
# ZFA: "http://purl.obolibrary.org/obo/ZFA_"
# SEPIO: "http://purl.obolibrary.org/obo/SEPIO_"
# STATO: "http://purl.obolibrary.org/obo/STATO_"
# DRON: "http://purl.obolibrary.org/obo/DRON_"
subject_id subject_label predicate_id object_id object_label notes mapping_justification
COB:0000004 charge owl:equivalentClass PATO:0002193 electric . semapv:ManualMappingCuration
COB:0000003 mass owl:equivalentClass PATO:0000125 mass . semapv:ManualMappingCuration
COB:0000004 charge owl:equivalentClass PATO:0002193 electric . semapv:ManualMappingCuration
COB:0000005 elementary charge rdfs:subClassOf owl:Thing owl:Thing Making ticket in PATO tracker semapv:ManualMappingCuration
COB:0000006 material entity owl:equivalentClass BFO:0000040 material entity . semapv:ManualMappingCuration
COB:0000006 material entity sssom:superClassOf SO:0000110 sequence_feature . semapv:ManualMappingCuration
Expand Down Expand Up @@ -103,40 +103,37 @@ COB:0000109 investigation owl:equivalentClass OBI:0000066 investigation . semapv
COB:0000110 material processing owl:equivalentClass OBI:0000094 material processing . semapv:ManualMappingCuration
COB:0000111 disposition owl:equivalentClass BFO:0000016 disposition . semapv:ManualMappingCuration
COB:0000112 function owl:equivalentClass BFO:0000034 function . semapv:ManualMappingCuration
COB:0000114 role owl:equivalentClass BFO:0000023 role . semapv:ManualMappingCuration
COB:0000113 plan owl:equivalentClass OBI:0000260 plan . semapv:ManualMappingCuration
COB:0000114 role owl:equivalentClass BFO:0000023 role . semapv:ManualMappingCuration
COB:0000502 characteristic sssom:superClassOf CHEBI:50906 role The ChEBI notion of a role doesn't strictly follow the BFO sense of either being a role or disposition, meaning that it's hard, if not impossible, to impose BFO order to this branch of ChEBI. See issue #173 semapv:ManualMappingCuration
COB:0000116 cellular membrane rdfs:subClassOf owl:Thing owl:Thing semapv:ManualMappingCuration
COB:0000118 cellular organism owl:equivalentClass CARO:0010004 cellular organism . semapv:ManualMappingCuration
COB:0000118 cellular organism owl:equivalentClass NCBITaxon:131567 cellular organisms . semapv:ManualMappingCuration
COB:0000118 cellular organism owl:equivalentClass CARO:0010004 cellular organism . semapv:ManualMappingCuration
COB:0000118 cellular organism sssom:superClassOf UBERON:0000468 multicellular organism . semapv:ManualMappingCuration
COB:0000118 cellular organism sssom:superClassOf PO:0000003 whole plant . semapv:ManualMappingCuration
COB:0000120 information representation owl:equivalentClass IAO:0000015 information carrier semapv:ManualMappingCuration
COB:0000119 evaluant role owl:equivalentClass OBI:0000067 evaluant role semapv:ManualMappingCuration
COB:0000121 measurement datum owl:equivalentClass IAO:0000109 measurement datum semapv:ManualMappingCuration
COB:0000036 contains process owl:equivalentProperty BFO:0000067 contains process . semapv:ManualMappingCuration
COB:0000071 occurs in owl:equivalentProperty BFO:0000066 occurs in . semapv:ManualMappingCuration
COB:0000047 has part owl:equivalentProperty BFO:0000051 has part . semapv:ManualMappingCuration
COB:0000070 has participant owl:equivalentProperty RO:0000057 has participant . semapv:ManualMappingCuration
COB:0000071 occurs in owl:equivalentProperty BFO:0000066 occurs in . semapv:ManualMappingCuration
COB:0000072 part of owl:equivalentProperty BFO:0000050 part of . semapv:ManualMappingCuration
COB:0000502 characteristic owl:equivalentClass BFO:0000020 specifically dependent continuant may be revised to be narrower semapv:ManualMappingCuration
COB:0000074 enabled by owl:equivalentProperty RO:0002333 enabled by . semapv:ManualMappingCuration
COB:0000502 characteristic owl:equivalentClass PATO:0000001 quality https://github.com/OBOFoundry/COB/issues/124 semapv:ManualMappingCuration
COB:0000502 characteristic owl:equivalentClass BFO:0000020 specifically dependent continuant may be revised to be narrower semapv:ManualMappingCuration
COB:0000502 characteristic sssom:superClassOf SO:0000400 sequence_attribute . semapv:ManualMappingCuration
COB:0000002 is concretized as owl:equivalentProperty RO:0000058 is concretized as . semapv:ManualMappingCuration
COB:0000511 has quantity rdfs:subPropertyOf owl:topDataProperty topDataProperty . semapv:ManualMappingCuration
COB:0000512 has characteristic owl:equivalentProperty RO:0000053 bearer of . semapv:ManualMappingCuration
COB:0000002 is concretized as owl:equivalentProperty RO:0000058 is concretized as . semapv:ManualMappingCuration
COB:0000078 concretizes owl:equivalentProperty RO:0000059 concretizes . semapv:ManualMappingCuration
COB:0000023 characteristic of owl:equivalentProperty RO:0000052 inheres in "In RO, 'inheres in' is the inverse of 'bearer of'." semapv:ManualMappingCuration
COB:0000086 executes owl:equivalentProperty STATO:0000102 executes . semapv:ManualMappingCuration
COB:0000016 executed by rdfs:subPropertyOf owl:topObjectProperty topObjectProperty "There is no inverse for 'executes' STATO, only in COB." semapv:ManualMappingCuration
COB:0000023 characteristic of owl:equivalentProperty RO:0000052 inheres in "In RO, 'inheres in' is the inverse of 'bearer of'." semapv:ManualMappingCuration
COB:0000024 participates in owl:equivalentProperty RO:0000056 participates in . semapv:ManualMappingCuration
COB:0000039 has specified input owl:equivalentProperty OBI:0000293 has_specified_input . semapv:ManualMappingCuration
COB:0000027 is specified input of owl:equivalentProperty OBI:0000295 is_specified_input_of . semapv:ManualMappingCuration
COB:0000028 is specified output of owl:equivalentProperty OBI:0000312 is_specified_output_of . semapv:ManualMappingCuration
COB:0000039 has specified input owl:equivalentProperty OBI:0000293 has_specified_input . semapv:ManualMappingCuration
COB:0000040 has specified output owl:equivalentProperty OBI:0000299 has_specified_output . semapv:ManualMappingCuration
COB:0000513 is about owl:equivalentProperty IAO:0000136 is about There is no inverse for 'is about' in IAO. semapv:ManualMappingCuration
COB:0000087 realizes owl:equivalentProperty BFO:0000055 realizes . semapv:ManualMappingCuration
COB:0000029 realized in owl:equivalentProperty BFO:0000054 realized in . semapv:ManualMappingCuration
COB:0000513 is about owl:equivalentProperty IAO:0000136 is about There is no inverse for 'is about' in IAO. semapv:ManualMappingCuration
COB:0000123 agent role owl:equivalentClass SEPIO:0000048 agent role semapv:ManualMappingCuration
COB:0000123 agent role sssom:superClassOf OBI:0000202 investigation agent role semapv:ManualMappingCuration

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