Singularity.bwa-0.7.17.ubuntu

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%post
    apt-get update && \
    apt-get install -y wget \
    bzip2 \
    gcc \
    make \
    zlib1g-dev

    cd /opt/ && \
    wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2 && \
    tar xvfj bwa-0.7.17.tar.bz2 && \
    rm -f bwa-0.7.17.tar.bz2 && \
    cd bwa-0.7.17 && \
    make

%test
    which bwa

%environment
    export PATH="/opt/bwa-0.7.17:${PATH}"