Singularity.bwa-0.7.17

BootStrap: docker
From: alpine:3.8

%post
    apk update && \
    apk add wget \
    bzip2 \
    gcc \
    make \
    zlib-dev \
    libc-dev \
    bash

    cd /usr/local/bin && \
    wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2 && \
    tar xvfj bwa-0.7.17.tar.bz2 && \
    rm -f bwa-0.7.17.tar.bz2 && \
    cd bwa-0.7.17 && \
    make

%test
    which bwa

%environment
    export PATH="/usr/local/bin/bwa-0.7.17:${PATH}"