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qc0.columns

###########################################
# Now we caluculate the statistics required for DART diagnostics
# Now we calculate the statistics required for DART diagnostics

stats.diag_stats(qc0)

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###########################################
# Summerize the grand statistics, which are the statistics aggregated over all the observations
# Summarize the grand statistics, which are the statistics aggregated over all the observations
# for each type of observation.
stats.grand_statistics(qc0)
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"cell_type": "markdown",
"metadata": {},
"source": [
"\n# Geographinc Plot of Observaions to look at QC\n\nThis example demonstrates how to read and observation sequence\nfile, and plot the observations on a map, with the color\nindicating the QC value.\n"
"\n# Geographic Plot of Observations to look at QC\n\nThis example demonstrates how to read and observation sequence\nfile, and plot the observations on a map, with the color\nindicating the QC value.\n"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"Now we caluculate the statistics required for DART diagnostics\n\n"
"Now we calculate the statistics required for DART diagnostics\n\n"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"Summerize the grand statistics, which are the statistics aggregated over all the observations\nfor each type of observation.\n\n"
"Summarize the grand statistics, which are the statistics aggregated over all the observations\nfor each type of observation.\n\n"
]
},
{
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@@ -1,5 +1,5 @@
"""
Geographinc Plot of Observaions to look at QC
Geographic Plot of Observations to look at QC
==============================================
This example demonstrates how to read and observation sequence
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2 changes: 1 addition & 1 deletion _sources/devel/CONTRIBUTING.md.txt
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Expand Up @@ -54,7 +54,7 @@ To set up your development environment, follow these steps:
pip install -e .
```

pyDARTdiags is now installed in your virtual enviroment in editable mode.
pyDARTdiags is now installed in your virtual environment in editable mode.

## Pull Requests

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Expand Up @@ -54,7 +54,7 @@ Then you can build the documentation with the following commands:
The built documentation will be in the ``build/html`` directory. Open the ``index.html``
file in your browser to view the documentation.

You can check all the links in the documenation by running the following command:
You can check all the links in the documentation by running the following command:

.. code-block :: text
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2 changes: 1 addition & 1 deletion _sources/examples/index.rst.txt
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Expand Up @@ -67,7 +67,7 @@ Here are some examples of how to use the library.

.. raw:: html

<div class="sphx-glr-thumbnail-title">Geographinc Plot of Observaions to look at QC</div>
<div class="sphx-glr-thumbnail-title">Geographic Plot of Observations to look at QC</div>
</div>


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6 changes: 3 additions & 3 deletions _sources/examples/plot_grand_stats.rst.txt
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Expand Up @@ -116,7 +116,7 @@ The columns of the dataframe are the same as the original obs_seq dataframe
.. GENERATED FROM PYTHON SOURCE LINES 39-40
Now we caluculate the statistics required for DART diagnostics
Now we calculate the statistics required for DART diagnostics

.. GENERATED FROM PYTHON SOURCE LINES 40-43
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.. GENERATED FROM PYTHON SOURCE LINES 56-58
Summerize the grand statistics, which are the statistics aggregated over all the observations
Summarize the grand statistics, which are the statistics aggregated over all the observations
for each type of observation.

.. GENERATED FROM PYTHON SOURCE LINES 58-59
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.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.086 seconds)
**Total running time of the script:** (0 minutes 0.273 seconds)


.. _sphx_glr_download_examples_plot_grand_stats.py:
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2 changes: 1 addition & 1 deletion _sources/examples/plot_qc_poss_vs_used.rst.txt
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.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.199 seconds)
**Total running time of the script:** (0 minutes 0.190 seconds)


.. _sphx_glr_download_examples_plot_qc_poss_vs_used.py:
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Computation times
=================
**00:00.544** total execution time for 3 files **from examples**:
**00:00.723** total execution time for 3 files **from examples**:

.. container::

Expand All @@ -32,12 +32,12 @@ Computation times
* - Example
- Time
- Mem (MB)
* - :ref:`sphx_glr_examples_plot_grand_stats.py` (``plot_grand_stats.py``)
- 00:00.273
- 0.0
* - :ref:`sphx_glr_examples_plot_qc_hover.py` (``plot_qc_hover.py``)
- 00:00.259
- 00:00.260
- 0.0
* - :ref:`sphx_glr_examples_plot_qc_poss_vs_used.py` (``plot_qc_poss_vs_used.py``)
- 00:00.199
- 0.0
* - :ref:`sphx_glr_examples_plot_grand_stats.py` (``plot_grand_stats.py``)
- 00:00.086
- 00:00.190
- 0.0
2 changes: 1 addition & 1 deletion _sources/index.rst.txt
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Expand Up @@ -16,7 +16,7 @@ pyDARTdiags
examples/index
api/index

pyDARTdiags is a Python library for obsevation space diagnostics for the Data Assimilation Research Testbed (`DART <https://github.com/NCAR/DART>`_).
pyDARTdiags is a Python library for observation space diagnostics for the Data Assimilation Research Testbed (`DART <https://github.com/NCAR/DART>`_).


.. caution::
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Computation times
=================
**00:00.544** total execution time for 3 files **from all galleries**:
**00:00.723** total execution time for 3 files **from all galleries**:

.. container::

Expand All @@ -32,12 +32,12 @@ Computation times
* - Example
- Time
- Mem (MB)
* - :ref:`sphx_glr_examples_plot_grand_stats.py` (``../examples/plot_grand_stats.py``)
- 00:00.273
- 0.0
* - :ref:`sphx_glr_examples_plot_qc_hover.py` (``../examples/plot_qc_hover.py``)
- 00:00.259
- 00:00.260
- 0.0
* - :ref:`sphx_glr_examples_plot_qc_poss_vs_used.py` (``../examples/plot_qc_poss_vs_used.py``)
- 00:00.199
- 0.0
* - :ref:`sphx_glr_examples_plot_grand_stats.py` (``../examples/plot_grand_stats.py``)
- 00:00.086
- 00:00.190
- 0.0
2 changes: 1 addition & 1 deletion _sources/userguide/index.rst.txt
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Expand Up @@ -40,7 +40,7 @@ Import the obs_sequence and plots module
Read an obs_sequence file
-------------------------

Read an observation sequence file into a DataFrama
Read an observation sequence file into a DataFrame

.. code-block :: python
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Expand Up @@ -11,7 +11,7 @@ Requirements
Installation
------------

pyDARTdiags can be installed through pip. We recommend installing pydartdiags in a virtual enviroment:
pyDARTdiags can be installed through pip. We recommend installing pydartdiags in a virtual environment:

.. code-block :: text
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2 changes: 1 addition & 1 deletion _sources/userguide/working-with-obsq.rst.txt
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Expand Up @@ -7,7 +7,7 @@ using python and pandas. The obs_sequence class provides a simple interface to r
examine, join, and write obs_sequence files.


Read an observsation sequence file
Read an observation sequence file
----------------------------------

Examine the data
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4 changes: 2 additions & 2 deletions api/index.html
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<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="module: obs_sequence" href="obs_sequence.html" />
<link rel="prev" title="Geographinc Plot of Observaions to look at QC" href="../examples/plot_qc_hover.html" />
<link rel="prev" title="Geographic Plot of Observations to look at QC" href="../examples/plot_qc_hover.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="" />
Expand Down Expand Up @@ -483,7 +483,7 @@ <h1>API Guide<a class="headerlink" href="#api-guide" title="Link to this heading
<i class="fa-solid fa-angle-left"></i>
<div class="prev-next-info">
<p class="prev-next-subtitle">previous</p>
<p class="prev-next-title">Geographinc Plot of Observaions to look at QC</p>
<p class="prev-next-title">Geographic Plot of Observations to look at QC</p>
</div>
</a>
<a class="right-next"
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<dt class="sig sig-object py" id="plots.plot_rank_histogram">
<span class="sig-prename descclassname"><span class="pre">plots.</span></span><span class="sig-name descname"><span class="pre">plot_rank_histogram</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">df</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">phase</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ens_size</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#plots.plot_rank_histogram" title="Link to this definition">#</a></dt>
<dd><p>Plots a rank histogram colored by observation type.</p>
<p>All histogram bars are initalized to be hidden and can be toggled visible in the plot’s legend</p>
<p>All histogram bars are initialized to be hidden and can be toggled visible in the plot’s legend</p>
</dd></dl>

<dl class="py function">
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</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>DataFrame containing columns for ‘rank’ and ‘obstype’.</p>
<dd class="field-even"><p>DataFrame containing columns for ‘rank’ and observation ‘type’.</p>
</dd>
</dl>
</dd></dl>
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2 changes: 1 addition & 1 deletion devel/CONTRIBUTING.html
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Expand Up @@ -456,7 +456,7 @@ <h2>Setting up your development environment<a class="headerlink" href="#setting-
</div>
</li>
</ol>
<p>pyDARTdiags is now installed in your virtual enviroment in editable mode.</p>
<p>pyDARTdiags is now installed in your virtual environment in editable mode.</p>
</section>
<section id="pull-requests">
<h2>Pull Requests<a class="headerlink" href="#pull-requests" title="Link to this heading">#</a></h2>
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Expand Up @@ -430,7 +430,7 @@ <h2>Building the Documentation Locally<a class="headerlink" href="#building-the-
</div>
<p>The built documentation will be in the <code class="docutils literal notranslate"><span class="pre">build/html</span></code> directory. Open the <code class="docutils literal notranslate"><span class="pre">index.html</span></code>
file in your browser to view the documentation.</p>
<p>You can check all the links in the documenation by running the following command:</p>
<p>You can check all the links in the documentation by running the following command:</p>
<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>make linkcheck
</pre></div>
</div>
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<div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="plot_qc_poss_vs_used.html">Possible vs. Used Observations</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_grand_stats.html">Grand Statistics</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographinc Plot of Observaions to look at QC</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographic Plot of Observations to look at QC</a></li>
</ul>
</div>
</nav></div>
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<p><a class="reference internal" href="plot_grand_stats.html#sphx-glr-examples-plot-grand-stats-py"><span class="std std-ref">Grand Statistics</span></a></p>
<div class="sphx-glr-thumbnail-title">Grand Statistics</div>
</div><div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to read and observation sequence file, and plot the observations on a map, with the color indicating the QC value."><img alt="" src="../_images/sphx_glr_plot_qc_hover_thumb.png" />
<p><a class="reference internal" href="plot_qc_hover.html#sphx-glr-examples-plot-qc-hover-py"><span class="std std-ref">Geographinc Plot of Observaions to look at QC</span></a></p>
<div class="sphx-glr-thumbnail-title">Geographinc Plot of Observaions to look at QC</div>
<p><a class="reference internal" href="plot_qc_hover.html#sphx-glr-examples-plot-qc-hover-py"><span class="std std-ref">Geographic Plot of Observations to look at QC</span></a></p>
<div class="sphx-glr-thumbnail-title">Geographic Plot of Observations to look at QC</div>
</div></div><div class="toctree-wrapper compound">
</div>
<div class="sphx-glr-footer sphx-glr-footer-gallery docutils container">
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<script>DOCUMENTATION_OPTIONS.pagename = 'examples/plot_grand_stats';</script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Geographinc Plot of Observaions to look at QC" href="plot_qc_hover.html" />
<link rel="next" title="Geographic Plot of Observations to look at QC" href="plot_qc_hover.html" />
<link rel="prev" title="Possible vs. Used Observations" href="plot_qc_poss_vs_used.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
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<div class="bd-toc-item navbar-nav"><ul class="current nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="plot_qc_poss_vs_used.html">Possible vs. Used Observations</a></li>
<li class="toctree-l1 current active"><a class="current reference internal" href="#">Grand Statistics</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographinc Plot of Observaions to look at QC</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographic Plot of Observations to look at QC</a></li>
</ul>
</div>
</nav></div>
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dtype=&#39;object&#39;)
</pre></div>
</div>
<p>Now we caluculate the statistics required for DART diagnostics</p>
<p>Now we calculate the statistics required for DART diagnostics</p>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">stats</span><span class="o">.</span><span class="n">diag_stats</span><span class="p">(</span><span class="n">qc0</span><span class="p">)</span>
</pre></div>
</div>
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- The function modifies the input DataFrame by adding new columns for the calculated statistics.
</pre></div>
</div>
<p>Summerize the grand statistics, which are the statistics aggregated over all the observations
<p>Summarize the grand statistics, which are the statistics aggregated over all the observations
for each type of observation.</p>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">stats</span><span class="o">.</span><span class="n">grand_statistics</span><span class="p">(</span><span class="n">qc0</span><span class="p">)</span>
</pre></div>
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</div>
</div>
<br />
<br /><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.086 seconds)</p>
<br /><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.273 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-examples-plot-grand-stats-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../_downloads/efb6f354051cfaaf6d3c2507130e9b6d/plot_grand_stats.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_grand_stats.ipynb</span></code></a></p>
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title="next page">
<div class="prev-next-info">
<p class="prev-next-subtitle">next</p>
<p class="prev-next-title">Geographinc Plot of Observaions to look at QC</p>
<p class="prev-next-title">Geographic Plot of Observations to look at QC</p>
</div>
<i class="fa-solid fa-angle-right"></i>
</a>
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14 changes: 7 additions & 7 deletions examples/plot_qc_hover.html

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4 changes: 2 additions & 2 deletions examples/plot_qc_poss_vs_used.html
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<div class="bd-toc-item navbar-nav"><ul class="current nav bd-sidenav">
<li class="toctree-l1 current active"><a class="current reference internal" href="#">Possible vs. Used Observations</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_grand_stats.html">Grand Statistics</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographinc Plot of Observaions to look at QC</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_qc_hover.html">Geographic Plot of Observations to look at QC</a></li>
</ul>
</div>
</nav></div>
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</div>
</div>
<br />
<br /><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.199 seconds)</p>
<br /><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.190 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-examples-plot-qc-poss-vs-used-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../_downloads/1a52f3978f5128f0ca7927e38b19e65a/plot_qc_poss_vs_used.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_qc_poss_vs_used.ipynb</span></code></a></p>
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<section id="computation-times">
<span id="sphx-glr-examples-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
<p><strong>00:00.544</strong> total execution time for 3 files <strong>from examples</strong>:</p>
<p><strong>00:00.723</strong> total execution time for 3 files <strong>from examples</strong>:</p>
<div class="docutils container">
<style scoped>
<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
Expand All @@ -402,16 +402,16 @@
</tr>
</thead>
<tbody>
<tr class="row-even"><td><p><a class="reference internal" href="plot_qc_hover.html#sphx-glr-examples-plot-qc-hover-py"><span class="std std-ref">Geographinc Plot of Observaions to look at QC</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_qc_hover.py</span></code>)</p></td>
<td><p>00:00.259</p></td>
<tr class="row-even"><td><p><a class="reference internal" href="plot_grand_stats.html#sphx-glr-examples-plot-grand-stats-py"><span class="std std-ref">Grand Statistics</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_grand_stats.py</span></code>)</p></td>
<td><p>00:00.273</p></td>
<td><p>0.0</p></td>
</tr>
<tr class="row-odd"><td><p><a class="reference internal" href="plot_qc_poss_vs_used.html#sphx-glr-examples-plot-qc-poss-vs-used-py"><span class="std std-ref">Possible vs. Used Observations</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_qc_poss_vs_used.py</span></code>)</p></td>
<td><p>00:00.199</p></td>
<tr class="row-odd"><td><p><a class="reference internal" href="plot_qc_hover.html#sphx-glr-examples-plot-qc-hover-py"><span class="std std-ref">Geographic Plot of Observations to look at QC</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_qc_hover.py</span></code>)</p></td>
<td><p>00:00.260</p></td>
<td><p>0.0</p></td>
</tr>
<tr class="row-even"><td><p><a class="reference internal" href="plot_grand_stats.html#sphx-glr-examples-plot-grand-stats-py"><span class="std std-ref">Grand Statistics</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_grand_stats.py</span></code>)</p></td>
<td><p>00:00.086</p></td>
<tr class="row-even"><td><p><a class="reference internal" href="plot_qc_poss_vs_used.html#sphx-glr-examples-plot-qc-poss-vs-used-py"><span class="std std-ref">Possible vs. Used Observations</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_qc_poss_vs_used.py</span></code>)</p></td>
<td><p>00:00.190</p></td>
<td><p>0.0</p></td>
</tr>
</tbody>
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