You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Stefan:
In the GEM lab '03-Pathway-visualization', you can display the map for the E. coli central carbon metabolism by using the following code in cell 3:
b=escher.Builder('e_coli_core.Core metabolism')
escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html')
The map will then show up as html in your data folder (which you can access from the location where you open the notebook)
This applies to all cells in the subsequent labs where you are trying to visualize maps with escher.Builder(). Assign the builder to a variable (as in e.g b=escher.Builder('e_coli_core.Core metabolism')) and then save it to html (as in escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html'))
The text was updated successfully, but these errors were encountered:
rasools
changed the title
Fix Hi @channel, in the GEM lab '03-Pathway-visualization', you can display the map for the E. coli central carbon metabolism by using the following code in cell 3: b=escher.Builder('e_coli_core.Core metabolism') escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html') The map will then show up as html in your data folder (which you can access from the location where you open the notebook) Stefan Ebmeyer 10:43 AM @channel This applies to all cells in the subsequent labs where you are trying to visualize maps with escher.Builder(). Assign the builder to a variable (as in e.g b=escher.Builder('e_coli_core.Core metabolism')) and then save it to html (as in escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html')) (edited) maps in GEMs lab
Fix maps in GEMs lab
Oct 17, 2024
Stefan:
In the GEM lab '03-Pathway-visualization', you can display the map for the E. coli central carbon metabolism by using the following code in cell 3:
b=escher.Builder('e_coli_core.Core metabolism')
escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html')
The map will then show up as html in your data folder (which you can access from the location where you open the notebook)
This applies to all cells in the subsequent labs where you are trying to visualize maps with escher.Builder(). Assign the builder to a variable (as in e.g b=escher.Builder('e_coli_core.Core metabolism')) and then save it to html (as in escher.Builder.save_html(b, filepath='data/central_carbon_e_coli.html'))
The text was updated successfully, but these errors were encountered: