update files

.github/workflows/deploy.yml

@@ -13,7 +13,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        python-version: [3.8]
+        python-version: [3.12]
     steps:
     - uses: actions/checkout@v2
 

.gitignore

@@ -139,4 +139,30 @@ cython_debug/
 
 */_build/
 
-*/.ipynb_checkpoints/
+*/.ipynb_checkpoints/
+
+# Julia stuff - from https://github.com/github/gitignore/blob/main/Julia.gitignore
+# Files generated by invoking Julia with --code-coverage
+*.jl.cov
+*.jl.*.cov
+
+# Files generated by invoking Julia with --track-allocation
+*.jl.mem
+
+# System-specific files and directories generated by the BinaryProvider and BinDeps packages
+# They contain absolute paths specific to the host computer, and so should not be committed
+deps/deps.jl
+deps/build.log
+deps/downloads/
+deps/usr/
+deps/src/
+
+# Build artifacts for creating documentation generated by the Documenter package
+docs/build/
+docs/site/
+
+# File generated by Pkg, the package manager, based on a corresponding Project.toml
+# It records a fixed state of all packages used by the project. As such, it should not be
+# committed for packages, but should be committed for applications that require a static
+# environment.
+Manifest.toml

LICENSE

@@ -2,7 +2,7 @@
 
 BSD License
 
-Copyright (c) 2021, Jessica A. Nash
+Copyright (c) 2024, The Molecular Sciences Software Institute and Lesson Authors
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification,

Makefile

@@ -0,0 +1,9 @@
+
+.PHONY: book 
+
+html:
+	jupyter-book build book/
+
+clean: book/_build
+	echo "Removing everything under _build"
+	rm -rf book/_build

README.md

@@ -6,12 +6,12 @@ This is a Jupyter book template for molssi workshops
 
 ### Building the book
 
-If you'd like to develop on and build the Scientific Visualization using Python book, you should:
+If you'd like to develop on and build this book, you should:
 
 - Clone this repository and run
 - Run `pip install -r requirements.txt` (it is recommended you do this within a virtual environment)
 - (Recommended) Remove the existing `book/_build/` directory
-- Run `jupyter-book build book/`
+- Run `make html` from the root of the repository
 
 A fully-rendered HTML version of the book will be built in `book/_build/html/`.
 
@@ -28,7 +28,7 @@ This will automatically push your build to the `gh-pages` branch. More informati
 
 ## Contributors
 
-We welcome and recognize all contributions. You can see a list of current contributors in the [contributors tab](https://github.com/janash/molssi_python_visualization/graphs/contributors).
+We welcome and recognize all contributions. 
 
 ## Credits
 

book/_config.yml

@@ -31,6 +31,10 @@ html:
   use_repository_button: true
   google_analytics_id: G-FHKVGE8HKZ
 
+extra_css:
+  - https://cdn.jsdelivr.net/npm/@fortawesome/fontawesome-free@6.6.0/css/fontawesome.min.css
+  - https://cdn.jsdelivr.net/npm/bootstrap@5.3.3/dist/css/bootstrap.min.css
+
 sphinx:
   config:
     html_js_files: