GitHub - ModelDBRepository/253991: Voltage imaging calibration in tuft dendrites of mitral cells (Djurisic et al 2004)

ModelDBRepository / 253991 Public

Notifications You must be signed in to change notification settings
Fork 1
Star 0

Voltage imaging calibration in tuft dendrites of mitral cells (Djurisic et al 2004)

modeldb.science/253991

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
EPSPClamp.mod		EPSPClamp.mod
avgdiams1.txt		avgdiams1.txt
avgdiams2.txt		avgdiams2.txt
avgdiams3.txt		avgdiams3.txt
avgdiams4.txt		avgdiams4.txt
avgdiams5.txt		avgdiams5.txt
basediams1.txt		basediams1.txt
basediams2.txt		basediams2.txt
basediams3.txt		basediams3.txt
basediams4.txt		basediams4.txt
basediams5.txt		basediams5.txt
epsp.txt		epsp.txt
epsp_soma.txt		epsp_soma.txt
lengths1.txt		lengths1.txt
lengths2.txt		lengths2.txt
lengths3.txt		lengths3.txt
lengths4.txt		lengths4.txt
lengths5.txt		lengths5.txt
membrane.hoc		membrane.hoc
morphology.hoc		morphology.hoc
mosinit.hoc		mosinit.hoc
nltemplate.hoc		nltemplate.hoc
order1.txt		order1.txt
order2.txt		order2.txt
order3.txt		order3.txt
order4.txt		order4.txt
order5.txt		order5.txt
parameters.hoc		parameters.hoc
readme.html		readme.html
screenshot1.png		screenshot1.png
screenshot2.png		screenshot2.png
test.ses		test.ses
xyangles1.txt		xyangles1.txt
xyangles2.txt		xyangles2.txt
xyangles3.txt		xyangles3.txt
xyangles4.txt		xyangles4.txt
xyangles5.txt		xyangles5.txt
xyz1.txt		xyz1.txt
xyz2.txt		xyz2.txt
xyz3.txt		xyz3.txt
xyz4.txt		xyz4.txt
xyz5.txt		xyz5.txt
zangles1.txt		zangles1.txt
zangles2.txt		zangles2.txt
zangles3.txt		zangles3.txt
zangles4.txt		zangles4.txt
zangles5.txt		zangles5.txt

Repository files navigation

<html>
This is the readme for simulation code associated with the paper<p/>
Djurisic M, Antic S, Chen WR, Zecevic D (2004) Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. J Neurosci 24:6703-14 <br/>
<a href="http://dx.doi.org/10.1523/JNEUROSCI.0307-04.2004">http://dx.doi.org/10.1523/JNEUROSCI.0307-04.2004</a><p/>
This model was contributed by Dejan Zecevic.<p/>
This model requires NEURON which is freely available from <a href="http://neuron.yale.edu">http://neuron.yale.edu</a><p/>
Usage:<p/>
To run the model (linux/unix) compile the mod file with a command like<p/>
nrnivmodl<p/>
or for mswin or mac use makenrndll. Start with the mosinit.hoc file (linux):<p/>
nrngui mosinit.hoc<p/>
or by double clicking (mswin) or dragging and dropping (mac). If you need more
help to run the simulation on your platform please consult this page:<p/>
<a href="https://senselab.med.yale.edu/ModelDB/NEURON_DwnldGuide.cshtml">https://senselab.med.yale.edu/ModelDB/NEURON_DwnldGuide.cshtml<a/>
<p/>
After running the model you should see the propagation of a passive EPSP into  the tuft compartments similar to Fig 3G trace 3 in the paper:<p/>
<img src="./screenshot1.png" alt="screenshot1" width="650">
<p/>
This model entry includes a mitral cell morphology with a detailed reconstruction of a tuft (slightly more elaborate than the one depicted in Fig 3G in the paper)
 depicted below in a shape plot with show diameter shape style selected<p/>
<img src="./screenshot2.png" alt="screenshot2" width="650">
</html>