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pars_mod.f95
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! -*- f95 -*-
! (c) 2016 - Ilya Prokin - isprokin@gmail.com - https://sites.google.com/site/ilyaprokin
! INRIA Rhone-Alpes
! STDP model : This module converts python definitions of parameters to FORTRAN95 derived data type.
module pars_mod
implicit none
type stimulation_type
real*8, pointer :: regular_on
real*8, pointer :: tsdt
real*8, pointer :: tpost
real*8, pointer :: post_on
real*8, pointer :: dt_stim
real*8, pointer :: num_stim
real*8, pointer :: pre_on
real*8, pointer :: Freq
real*8, pointer :: tables_step
end type stimulation_type
type Glu_release_type
real*8, pointer :: steadyrise_on
real*8, pointer :: Glumax
real*8, pointer :: BaseLevel
real*8, pointer :: tauGlu
end type Glu_release_type
type action_type
real*8, pointer :: APdur
real*8, pointer :: action_as_VDCC
real*8, pointer :: DPmax
real*8, pointer :: APmax
real*8, pointer :: tausbAP
end type action_type
type integration_type
real*8, pointer :: t_step
real*8, pointer :: t_start
real*8, pointer :: t_end
real*8, pointer :: ATOL
real*8, pointer :: RTOL
real*8, pointer :: MXSTEP
real*8, pointer :: HMAX
end type integration_type
type common_type
real*8, pointer :: R
real*8, pointer :: RT
real*8, pointer :: T
real*8, pointer :: F
real*8, pointer :: zS
real*8, pointer :: Ca_out
end type common_type
type CB1R_type
real*8, pointer :: on
real*8, pointer :: Alpha
real*8, pointer :: Beta
real*8, pointer :: Gamma
real*8, pointer :: Epsilon
end type CB1R_type
type mem_type
real*8, pointer :: EL
real*8, pointer :: gL
real*8, pointer :: Cm
end type mem_type
type NMDA_type
real*8, pointer :: on
real*8, pointer :: gNMDA
real*8, pointer :: p_ca
real*8, pointer :: Mg
real*8, pointer :: Alpha
real*8, pointer :: Beta
end type NMDA_type
type AMPA_type
real*8, pointer :: on
real*8, pointer :: gAMPA
real*8, pointer :: Epsilon
real*8, pointer :: Beta
real*8, pointer :: Alpha
real*8, pointer :: Gamma
end type AMPA_type
type DA_type
real*8, pointer :: gamma1DA
real*8, pointer :: gamma2DA
real*8, pointer :: DA
end type DA_type
type post_CaMKII_plast_type
real*8, pointer :: kpkaI1
real*8, pointer :: PP10
real*8, pointer :: KM
real*8, pointer :: K5
real*8, pointer :: k12
real*8, pointer :: k11
real*8, pointer :: kcan0I1
real*8, pointer :: km11
real*8, pointer :: CaMKT
real*8, pointer :: k7
real*8, pointer :: k6
real*8, pointer :: ncanI1
real*8, pointer :: I10
real*8, pointer :: CaMT
real*8, pointer :: KdpkaI1
real*8, pointer :: kcanI1
real*8, pointer :: KdcanI1
real*8, pointer :: kpka0I1
real*8, pointer :: Ka3
real*8, pointer :: Ka2
real*8, pointer :: Ka1
real*8, pointer :: Ka4
real*8, pointer :: npkaI1
end type post_CaMKII_plast_type
type ECb_smooth_type
real*8, pointer :: on
real*8, pointer :: K
real*8, pointer :: n
real*8, pointer :: kw
real*8, pointer :: tau
real*8, pointer :: kadd
real*8, pointer :: kn
end type ECb_smooth_type
type ECb_type
real*8, pointer :: on
real*8, pointer :: CB1R_on
real*8, pointer :: kCB1R
real*8, pointer :: alphaAEACB1
real*8, pointer :: P1
real*8, pointer :: P2
real*8, pointer :: P3
real*8, pointer :: P4
real*8, pointer :: vATAEA
real*8, pointer :: LTDstart
real*8, pointer :: LTDstop
real*8, pointer :: LTDMax
real*8, pointer :: LTPstart
real*8, pointer :: LTPMax
real*8, pointer :: KFAAH
real*8, pointer :: vFAAH
end type ECb_type
type KandP_on_DAGLP_type
real*8, pointer :: nK
real*8, pointer :: rP
real*8, pointer :: rK
end type KandP_on_DAGLP_type
type DGLandDAG_type
real*8, pointer :: KDGL
real*8, pointer :: kMAGL
real*8, pointer :: rDGL
real*8, pointer :: kDAGK
end type DGLandDAG_type
type IP3_type
real*8, pointer :: kappad
real*8, pointer :: kdelta
real*8, pointer :: r5p
real*8, pointer :: v3k
real*8, pointer :: kd
real*8, pointer :: vdelta
real*8, pointer :: k3
real*8, pointer :: kr
real*8, pointer :: kp
real*8, pointer :: vbeta
real*8, pointer :: kpi
real*8, pointer :: n3
end type IP3_type
type CICR_type
real*8, pointer :: a2
real*8, pointer :: ver
real*8, pointer :: d3
real*8, pointer :: rc
real*8, pointer :: rl
real*8, pointer :: rhoER
real*8, pointer :: d5
real*8, pointer :: d2
real*8, pointer :: ker
real*8, pointer :: d1
end type CICR_type
type CaBuff_type
real*8, pointer :: BT
real*8, pointer :: Cab
real*8, pointer :: tauCab
real*8, pointer :: KdB
end type CaBuff_type
type I_to_Ca_flux_type
real*8, pointer :: NMDA
real*8, pointer :: VDCC
real*8, pointer :: TRPV1
end type I_to_Ca_flux_type
type TRPV1_type
real*8, pointer :: on
real*8, pointer :: gTRPV1
real*8, pointer :: p_ca
real*8, pointer :: C
real*8, pointer :: D
real*8, pointer :: DH
real*8, pointer :: KD
real*8, pointer :: J0
real*8, pointer :: L
real*8, pointer :: P
real*8, pointer :: z
real*8, pointer :: DS
real*8, pointer :: K
end type TRPV1_type
type caL13_type
real*8, pointer :: on
real*8, pointer :: pcaLbar
real*8, pointer :: mslope
real*8, pointer :: hshift
real*8, pointer :: vm
real*8, pointer :: mshift
real*8, pointer :: hslope
real*8, pointer :: kpr
real*8, pointer :: c
real*8, pointer :: k
real*8, pointer :: hvhalf
real*8, pointer :: mvhalf
real*8, pointer :: cpr
real*8, pointer :: htau
real*8, pointer :: hqfact
real*8, pointer :: qfact
end type caL13_type
type pars_type
type(caL13_type) :: caL13
type(TRPV1_type) :: TRPV1
type(I_to_Ca_flux_type) :: I_to_Ca_flux
type(CaBuff_type) :: CaBuff
type(CICR_type) :: CICR
type(IP3_type) :: IP3
type(DGLandDAG_type) :: DGLandDAG
type(KandP_on_DAGLP_type) :: KandP_on_DAGLP
type(ECb_type) :: ECb
type(ECb_smooth_type) :: ECb_smooth
type(post_CaMKII_plast_type) :: post_CaMKII_plast
type(DA_type) :: DA
type(AMPA_type) :: AMPA
type(NMDA_type) :: NMDA
type(mem_type) :: mem
type(CB1R_type) :: CB1R
type(common_type) :: common
type(integration_type) :: integration
type(action_type) :: action
type(Glu_release_type) :: Glu_release
type(stimulation_type) :: stimulation
end type pars_type
contains
subroutine parameters_get(pars, lv)
type(pars_type) :: pars
real*8, target :: lv(165)
pars%caL13%on => lv(1)
pars%caL13%pcaLbar => lv(2)
pars%caL13%mslope => lv(3)
pars%caL13%hshift => lv(4)
pars%caL13%vm => lv(5)
pars%caL13%mshift => lv(6)
pars%caL13%hslope => lv(7)
pars%caL13%kpr => lv(8)
pars%caL13%c => lv(9)
pars%caL13%k => lv(10)
pars%caL13%hvhalf => lv(11)
pars%caL13%mvhalf => lv(12)
pars%caL13%cpr => lv(13)
pars%caL13%htau => lv(14)
pars%caL13%hqfact => lv(15)
pars%caL13%qfact => lv(16)
pars%TRPV1%on => lv(17)
pars%TRPV1%gTRPV1 => lv(18)
pars%TRPV1%p_ca => lv(19)
pars%TRPV1%C => lv(20)
pars%TRPV1%D => lv(21)
pars%TRPV1%DH => lv(22)
pars%TRPV1%KD => lv(23)
pars%TRPV1%J0 => lv(24)
pars%TRPV1%L => lv(25)
pars%TRPV1%P => lv(26)
pars%TRPV1%z => lv(27)
pars%TRPV1%DS => lv(28)
pars%TRPV1%K => lv(29)
pars%I_to_Ca_flux%NMDA => lv(30)
pars%I_to_Ca_flux%VDCC => lv(31)
pars%I_to_Ca_flux%TRPV1 => lv(32)
pars%CaBuff%BT => lv(33)
pars%CaBuff%Cab => lv(34)
pars%CaBuff%tauCab => lv(35)
pars%CaBuff%KdB => lv(36)
pars%CICR%a2 => lv(37)
pars%CICR%ver => lv(38)
pars%CICR%d3 => lv(39)
pars%CICR%rc => lv(40)
pars%CICR%rl => lv(41)
pars%CICR%rhoER => lv(42)
pars%CICR%d5 => lv(43)
pars%CICR%d2 => lv(44)
pars%CICR%ker => lv(45)
pars%CICR%d1 => lv(46)
pars%IP3%kappad => lv(47)
pars%IP3%kdelta => lv(48)
pars%IP3%r5p => lv(49)
pars%IP3%v3k => lv(50)
pars%IP3%kd => lv(51)
pars%IP3%vdelta => lv(52)
pars%IP3%k3 => lv(53)
pars%IP3%kr => lv(54)
pars%IP3%kp => lv(55)
pars%IP3%vbeta => lv(56)
pars%IP3%kpi => lv(57)
pars%IP3%n3 => lv(58)
pars%DGLandDAG%KDGL => lv(59)
pars%DGLandDAG%kMAGL => lv(60)
pars%DGLandDAG%rDGL => lv(61)
pars%DGLandDAG%kDAGK => lv(62)
pars%KandP_on_DAGLP%nK => lv(63)
pars%KandP_on_DAGLP%rP => lv(64)
pars%KandP_on_DAGLP%rK => lv(65)
pars%ECb%on => lv(66)
pars%ECb%CB1R_on => lv(67)
pars%ECb%kCB1R => lv(68)
pars%ECb%alphaAEACB1 => lv(69)
pars%ECb%P1 => lv(70)
pars%ECb%P2 => lv(71)
pars%ECb%P3 => lv(72)
pars%ECb%P4 => lv(73)
pars%ECb%vATAEA => lv(74)
pars%ECb%LTDstart => lv(75)
pars%ECb%LTDstop => lv(76)
pars%ECb%LTDMax => lv(77)
pars%ECb%LTPstart => lv(78)
pars%ECb%LTPMax => lv(79)
pars%ECb%KFAAH => lv(80)
pars%ECb%vFAAH => lv(81)
pars%ECb_smooth%on => lv(82)
pars%ECb_smooth%K => lv(83)
pars%ECb_smooth%n => lv(84)
pars%ECb_smooth%kw => lv(85)
pars%ECb_smooth%tau => lv(86)
pars%ECb_smooth%kadd => lv(87)
pars%ECb_smooth%kn => lv(88)
pars%post_CaMKII_plast%kpkaI1 => lv(89)
pars%post_CaMKII_plast%PP10 => lv(90)
pars%post_CaMKII_plast%KM => lv(91)
pars%post_CaMKII_plast%K5 => lv(92)
pars%post_CaMKII_plast%k12 => lv(93)
pars%post_CaMKII_plast%k11 => lv(94)
pars%post_CaMKII_plast%kcan0I1 => lv(95)
pars%post_CaMKII_plast%km11 => lv(96)
pars%post_CaMKII_plast%CaMKT => lv(97)
pars%post_CaMKII_plast%k7 => lv(98)
pars%post_CaMKII_plast%k6 => lv(99)
pars%post_CaMKII_plast%ncanI1 => lv(100)
pars%post_CaMKII_plast%I10 => lv(101)
pars%post_CaMKII_plast%CaMT => lv(102)
pars%post_CaMKII_plast%KdpkaI1 => lv(103)
pars%post_CaMKII_plast%kcanI1 => lv(104)
pars%post_CaMKII_plast%KdcanI1 => lv(105)
pars%post_CaMKII_plast%kpka0I1 => lv(106)
pars%post_CaMKII_plast%Ka3 => lv(107)
pars%post_CaMKII_plast%Ka2 => lv(108)
pars%post_CaMKII_plast%Ka1 => lv(109)
pars%post_CaMKII_plast%Ka4 => lv(110)
pars%post_CaMKII_plast%npkaI1 => lv(111)
pars%DA%gamma1DA => lv(112)
pars%DA%gamma2DA => lv(113)
pars%DA%DA => lv(114)
pars%AMPA%on => lv(115)
pars%AMPA%gAMPA => lv(116)
pars%AMPA%Epsilon => lv(117)
pars%AMPA%Beta => lv(118)
pars%AMPA%Alpha => lv(119)
pars%AMPA%Gamma => lv(120)
pars%NMDA%on => lv(121)
pars%NMDA%gNMDA => lv(122)
pars%NMDA%p_ca => lv(123)
pars%NMDA%Mg => lv(124)
pars%NMDA%Alpha => lv(125)
pars%NMDA%Beta => lv(126)
pars%mem%EL => lv(127)
pars%mem%gL => lv(128)
pars%mem%Cm => lv(129)
pars%CB1R%on => lv(130)
pars%CB1R%Alpha => lv(131)
pars%CB1R%Beta => lv(132)
pars%CB1R%Gamma => lv(133)
pars%CB1R%Epsilon => lv(134)
pars%common%R => lv(135)
pars%common%RT => lv(136)
pars%common%T => lv(137)
pars%common%F => lv(138)
pars%common%zS => lv(139)
pars%common%Ca_out => lv(140)
pars%integration%t_step => lv(141)
pars%integration%t_start => lv(142)
pars%integration%t_end => lv(143)
pars%integration%ATOL => lv(144)
pars%integration%RTOL => lv(145)
pars%integration%MXSTEP => lv(146)
pars%integration%HMAX => lv(147)
pars%action%APdur => lv(148)
pars%action%action_as_VDCC => lv(149)
pars%action%DPmax => lv(150)
pars%action%APmax => lv(151)
pars%action%tausbAP => lv(152)
pars%Glu_release%steadyrise_on => lv(153)
pars%Glu_release%Glumax => lv(154)
pars%Glu_release%BaseLevel => lv(155)
pars%Glu_release%tauGlu => lv(156)
pars%stimulation%regular_on => lv(157)
pars%stimulation%tsdt => lv(158)
pars%stimulation%tpost => lv(159)
pars%stimulation%post_on => lv(160)
pars%stimulation%dt_stim => lv(161)
pars%stimulation%num_stim => lv(162)
pars%stimulation%pre_on => lv(163)
pars%stimulation%Freq => lv(164)
pars%stimulation%tables_step => lv(165)
end subroutine parameters_get
end module pars_mod