MotrpacBicQC 0.9.6: download with recursive, metabolomics updates

* Download and read file from GCP function can create recursive folders (@christopherjin) * Adjustments in metabolomics metadata sample files QC to enable processing of old submissions (before batch related variables were required)
MoTrPAC · Sep 23, 2024 · 017b1ca · 017b1ca
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: MotrpacBicQC
 Type: Package
 Title: QC/QA functions for the MoTrPAC community
-Version: 0.9.51
-Date: 2024-08-07
+Version: 0.9.6
+Date: 2024-09-23
 Author: MoTrPAC Bioinformatics Center
 Maintainer: David Jimenez-Morales <davidjm@stanford.edu>
 Description: R Package for the analysis of MoTrPAC datasets. 

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+# MotrpacBicQC 0.9.6 (2024-09-23)
+
+* Download and read file from GCP function can create recursive folders (@christopherjin)
+* Adjustments in metabolomics metadata sample files QC to enable processing 
+of old submissions (before batch related variables were required)
+
 # MotrpacBicQC 0.9.5 (2024-05-22)
 
 * Proteomics: provide QC support for TMT-18
@@ -10,7 +16,6 @@
   + Improve detecting the source of errors
   + Improve verbosity and feedback to the user
 
-
 # MotrpacBicQC 0.9.3 (2024-03-25)
 
 * Critical update `validate_refmetname`: ensure checking the refmet standarized name. Update refmet tests

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/other_functions.html b/docs/articles/other_functions.html
@@ -4,9 +4,9 @@
 <meta charset="utf-8">
 <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
 <meta name="generator" content="pandoc">
-<meta name="date" content="2024-05-22">
+<meta name="date" content="2024-09-23">
 <title>MotrpacBicQC: Other Functions</title>
-<script src="other_functions_files/header-attrs-2.25/header-attrs.js"></script><script src="other_functions_files/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1">
+<script src="other_functions_files/header-attrs-2.27/header-attrs.js"></script><script src="other_functions_files/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1">
 <link href="other_functions_files/bootstrap-3.3.7/css/bootstrap.min.css" rel="stylesheet">
 <script src="other_functions_files/bootstrap-3.3.7/js/bootstrap.min.js"></script><script src="other_functions_files/navigation-1.1/tabsets.js"></script><script src="other_functions_files/navigation-1.1/codefolding.js"></script><link href="other_functions_files/magnific-popup-1.1.0/magnific-popup.css" rel="stylesheet">
 <script src="other_functions_files/magnific-popup-1.1.0/jquery.magnific-popup.min.js"></script><link href="other_functions_files/downcute-0.1/downcute.css" rel="stylesheet">
@@ -123,7 +123,7 @@ <h1 class="title">MotrpacBicQC: Other Functions</h1>
 
       <p class="authors">
          </p>
-<p class="date"><span class="glyphicon glyphicon-calendar"></span> 2024-05-22</p>
+<p class="date"><span class="glyphicon glyphicon-calendar"></span> 2024-09-23</p>
 
 
 

diff --git a/docs/articles/other_functions_files/header-attrs-2.27/header-attrs.js b/docs/articles/other_functions_files/header-attrs-2.27/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});