env.yml

# gcc, gxx, and gfortran must be installed in environment, per
# https://stackoverflow.com/questions/46450912/unable-to-execute-x86-64-conda-cos6-linux-gnu-gcc-no-such-file-or-directory

name: doomsayer-environment
channels:
  - conda-forge
  - bioconda
  - r
dependencies:
  - python
  - numpy
  - pandas
  - scikit-learn
  - scipy
  - matplotlib
  - biopython
  - colorama
  - cyvcf2=0.8
  - pyfaidx=0.5
  - joblib=0.11
  - gcc_linux-64
  - gxx_linux-64
  - gfortran_linux-64
  - curl=7.48.0
  - r-base=3.4.2
  - r-irkernel=0.8
  - r-devtools=1.13
  - r-tidyverse=1.1
#   - r-ggally
  - r-shiny=1.0
#   - r-heatmaply
  - r-rcurl=1.95
  - r-yaml
  - r-knitr
  - r-rmarkdown=1.6
  - r-viridis
  - r-RColorBrewer
  - bcftools=1.6
  - pandoc=1.19
  - pip:
    - nimfa==1.3.2