From ea70215336f1777274af9379fa0998123f9e12c3 Mon Sep 17 00:00:00 2001 From: Jonathan Griffiths <7976085+jonathangriffiths@users.noreply.github.com> Date: Tue, 9 Jul 2024 10:17:58 +0100 Subject: [PATCH] bump bioc version in action --- .github/workflows/check-bioc.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index c298774..65553ff 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,9 +52,9 @@ jobs: fail-fast: false matrix: config: - - { os: ubuntu-latest, r: 'devel', bioc: '3.19', cont: "bioconductor/bioconductor_docker:devel-amd64", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - - { os: macOS-latest, r: 'devel', bioc: '3.19'} - - { os: windows-latest, r: 'devel', bioc: '3.19'} + - { os: ubuntu-latest, r: 'devel', bioc: '3.20', cont: "bioconductor/bioconductor_docker:devel-amd64", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } + - { os: macOS-latest, r: 'devel', bioc: '3.20'} + - { os: windows-latest, r: 'devel', bioc: '3.20'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: @@ -179,7 +179,7 @@ jobs: gha_repos <- if( .Platform$OS.type == "unix" && Sys.info()["sysname"] != "Darwin" ) c( - "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.19/bioc", + "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.20/bioc", BiocManager::repositories() ) else BiocManager::repositories()