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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ambientContribMaximum)
export(ambientContribNegative)
export(ambientContribSparse)
export(ambientProfileBimodal)
export(ambientProfileEmpty)
export(barcodeRanks)
export(chimericDrops)
export(cleanTagCounts)
export(controlAmbience)
export(defaultDrops)
export(downsampleBatches)
export(downsampleMatrix)
export(downsampleReads)
export(emptyDrops)
export(emptyDropsCellRanger)
export(encodeSequences)
export(estimateAmbience)
export(get10xMolInfoStats)
export(hashedDrops)
export(inferAmbience)
export(makeCountMatrix)
export(maximumAmbience)
export(read10xCounts)
export(read10xMolInfo)
export(removeAmbience)
export(removeChimericDrops)
export(removeSwappedDrops)
export(swappedDrops)
export(testEmptyDrops)
export(write10xCounts)
exportMethods(ambientContribMaximum)
exportMethods(ambientContribNegative)
exportMethods(ambientContribSparse)
exportMethods(ambientProfileBimodal)
exportMethods(ambientProfileEmpty)
exportMethods(barcodeRanks)
exportMethods(cleanTagCounts)
exportMethods(defaultDrops)
exportMethods(emptyDrops)
exportMethods(emptyDropsCellRanger)
exportMethods(hashedDrops)
exportMethods(removeAmbience)
import(SingleCellExperiment)
importClassesFrom(DelayedArray,DelayedArray)
importClassesFrom(Matrix,CsparseMatrix)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(SparseArray,COO_SparseArray)
importClassesFrom(SparseArray,SparseArray)
importFrom(BiocGenerics,match)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(BiocParallel,bpnworkers)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,blockApply)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedArray,currentViewport)
importFrom(DelayedArray,getAutoBPPARAM)
importFrom(DelayedArray,makeNindexFromArrayViewport)
importFrom(DelayedArray,setAutoBPPARAM)
importFrom(DelayedArray,write_block)
importFrom(DelayedMatrixStats,colMins)
importFrom(DelayedMatrixStats,colQuantiles)
importFrom(GenomicRanges,GRanges)
importFrom(HDF5Array,TENxMatrix)
importFrom(IRanges,IRanges)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,writeMM)
importFrom(R.utils,gzip)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"ROWNAMES<-")
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,ROWNAMES)
importFrom(S4Vectors,extractROWS)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SparseArray,nzvals)
importFrom(SparseArray,nzwhich)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(beachmat,colBlockApply)
importFrom(dqrng,generateSeedVectors)
importFrom(edgeR,goodTuringProportions)
importFrom(edgeR,q2qnbinom)
importFrom(methods,as)
importFrom(methods,is)
importFrom(rhdf5,H5Dclose)
importFrom(rhdf5,H5Dget_space)
importFrom(rhdf5,H5Dopen)
importFrom(rhdf5,H5Fclose)
importFrom(rhdf5,H5Fopen)
importFrom(rhdf5,H5Gclose)
importFrom(rhdf5,H5Gopen)
importFrom(rhdf5,H5Sclose)
importFrom(rhdf5,H5Sget_simple_extent_dims)
importFrom(rhdf5,h5createFile)
importFrom(rhdf5,h5createGroup)
importFrom(rhdf5,h5ls)
importFrom(rhdf5,h5read)
importFrom(rhdf5,h5write)
importFrom(rhdf5,h5writeAttribute)
importFrom(scuttle,.bpNotSharedOrUp)
importFrom(scuttle,downsampleBatches)
importFrom(scuttle,downsampleMatrix)
importFrom(scuttle,isOutlier)
importFrom(scuttle,librarySizeFactors)
importFrom(scuttle,sumCountsAcrossCells)
importFrom(scuttle,sumCountsAcrossFeatures)
importFrom(stats,kmeans)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,optimize)
importFrom(stats,p.adjust)
importFrom(stats,pnbinom)
importFrom(stats,ppois)
importFrom(stats,qnbinom)
importFrom(stats,quantile)
importFrom(stats,rexp)
importFrom(stats,rgamma)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(utils,tail)
importFrom(utils,write.table)
useDynLib(DropletUtils)