02-gnsz_files_with_annotations_csv.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Saving file path, onset and end time to a CSV file of the 256 Hz gnsz files"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import os\n",
    "import numpy as np\n",
    "import mne\n",
    "import matplotlib.pyplot as plt\n",
    "import pandas as pd\n",
    "%matplotlib qt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "fileObject = open('gnsz_256.txt', \"r\")\n",
    "data = fileObject.read()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "gnsz_256 = data.split('\\n')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "''"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gnsz_256\n",
    "gnsz_256.pop()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "pref_ch = ['EEG FP1-REF',\n",
    " 'EEG FP2-REF',\n",
    " 'EEG F3-REF',\n",
    " 'EEG F4-REF',\n",
    " 'EEG C3-REF',\n",
    " 'EEG C4-REF',\n",
    " 'EEG P3-REF',\n",
    " 'EEG P4-REF',\n",
    " 'EEG O1-REF',\n",
    " 'EEG O2-REF',\n",
    " 'EEG F7-REF',\n",
    " 'EEG F8-REF',\n",
    " 'EEG T3-REF',\n",
    " 'EEG T4-REF',\n",
    " 'EEG T5-REF',\n",
    " 'EEG T6-REF',\n",
    " 'EEG FZ-REF',\n",
    " 'EEG CZ-REF',\n",
    " 'EEG PZ-REF',\n",
    " 'EEG A1-REF',\n",
    " 'EEG A2-REF']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "gnsz_eeg_annot = dict()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'00004456_s015_t002.tse'"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gnsz_256[0].split('/')[9]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\044\\00004456\\s015_2014_06_19\\00004456_s015_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\044\\00004456\\s015_2014_06_19\\00004456_s015_t004.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\079\\00007936\\s007_2014_08_21\\00007936_s007_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\079\\00007936\\s007_2014_08_21\\00007936_s007_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\079\\00007937\\s003_2015_04_01\\00007937_s003_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\083\\00008303\\s001_2011_11_23\\00008303_s001_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\084\\00008480\\s004_2012_11_09\\00008480_s004_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t004.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t007.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s006_2014_09_23\\00009104_s006_t021.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s007_2014_09_24\\00009104_s007_t015.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s009_2014_09_25\\00009104_s009_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\091\\00009104\\s010_2014_09_26\\00009104_s010_t015.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\092\\00009232\\s004_2012_10_11\\00009232_s004_t010.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\096\\00009623\\s005_2012_10_20\\00009623_s005_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\096\\00009623\\s005_2012_10_20\\00009623_s005_t005.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\096\\00009623\\s005_2012_10_20\\00009623_s005_t008.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\098\\00009852\\s003_2013_09_25\\00009852_s003_t006.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\099\\00009932\\s006_2014_10_02\\00009932_s006_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\099\\00009934\\s002_2013_03_16\\00009934_s002_t006.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\100\\00010020\\s001_2013_03_23\\00010020_s001_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\100\\00010020\\s001_2013_03_23\\00010020_s001_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\101\\00010158\\s003_2013_01_14\\00010158_s003_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\101\\00010158\\s003_2013_01_14\\00010158_s003_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\101\\00010158\\s003_2013_01_14\\00010158_s003_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\107\\00010760\\s002_2013_09_18\\00010760_s002_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\108\\00010843\\s009_2014_10_07\\00010843_s009_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\108\\00010843\\s009_2014_10_07\\00010843_s009_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\108\\00010843\\s009_2014_10_07\\00010843_s009_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\112\\00011272\\s003_2014_02_19\\00011272_s003_t006.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\118\\00011870\\s001_2014_08_13\\00011870_s001_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\118\\00011870\\s001_2014_08_13\\00011870_s001_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\118\\00011870\\s003_2014_08_13\\00011870_s003_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\118\\00011870\\s003_2014_08_13\\00011870_s003_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\118\\00011870\\s003_2014_08_13\\00011870_s003_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\119\\00011972\\s004_2014_09_17\\00011972_s004_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\119\\00011972\\s004_2014_09_17\\00011972_s004_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\119\\00011972\\s006_2014_09_17\\00011972_s006_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\127\\00012707\\s003_2015_01_29\\00012707_s003_t007.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\127\\00012707\\s003_2015_01_29\\00012707_s003_t009.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s001_2015_04_26\\00012940_s001_t003.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s002_2015_04_26\\00012940_s002_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s002_2015_04_26\\00012940_s002_t005.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s002_2015_04_26\\00012940_s002_t006.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s002_2015_04_26\\00012940_s002_t008.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s002_2015_04_26\\00012940_s002_t009.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s003_2015_04_27\\00012940_s003_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s003_2015_04_27\\00012940_s003_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s003_2015_04_27\\00012940_s003_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s003_2015_04_27\\00012940_s003_t004.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012940\\s003_2015_04_27\\00012940_s003_t005.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012941\\s002_2015_04_19\\00012941_s002_t000.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012941\\s002_2015_04_19\\00012941_s002_t001.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012941\\s002_2015_04_19\\00012941_s002_t006.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n",
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\129\\00012941\\s002_2015_04_19\\00012941_s002_t007.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n"
     ]
    }
   ],
   "source": [
    "iter = 1\n",
    "for path in gnsz_256:\n",
    "    temp = dict()\n",
    "    temp['path'] = path\n",
    "    raw = mne.io.read_raw_edf(path[:-4] + '.edf')\n",
    "    temp['edf'] = raw.pick_channels(pref_ch)\n",
    "\n",
    "    fileObject = open(path[:-4] + '.tse', \"r\")\n",
    "    data = fileObject.read()\n",
    "    \n",
    "    components = data.split('\\n\\n')\n",
    "    events = components[1].split('\\n')\n",
    "\n",
    "    onset = []\n",
    "    duration = []\n",
    "    description = []\n",
    "    end = []\n",
    "    for i in range(len(events)-1):\n",
    "        onset.append(float(events[i].split()[0]))\n",
    "        end.append(float(events[i].split()[1]))\n",
    "        duration.append(round(float(events[i].split()[1]) - float(events[i].split()[0]),4))\n",
    "        description.append(events[i].split()[2])\n",
    "    \n",
    "    temp['onset'] = onset\n",
    "    temp['end'] = end\n",
    "    temp['duration'] = duration\n",
    "    temp['description'] = description\n",
    "\n",
    "    gnsz_eeg_annot[iter] = temp\n",
    "    iter = iter+1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{1: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/044/00004456/s015_2014_06_19/00004456_s015_t002.tse',\n",
       "  'edf': <RawEDF | 00004456_s015_t002.edf, 21 x 284928 (1113.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0,\n",
       "   325.0234,\n",
       "   353.9688,\n",
       "   454.1289,\n",
       "   470.1211,\n",
       "   487.0273,\n",
       "   501.0664,\n",
       "   523.1563,\n",
       "   550.1055,\n",
       "   694.2227,\n",
       "   710.082],\n",
       "  'end': [325.0234,\n",
       "   353.9688,\n",
       "   454.1289,\n",
       "   470.1211,\n",
       "   487.0273,\n",
       "   501.0664,\n",
       "   523.1563,\n",
       "   550.1055,\n",
       "   694.2227,\n",
       "   710.082,\n",
       "   1113.0],\n",
       "  'duration': [325.0234,\n",
       "   28.9454,\n",
       "   100.1601,\n",
       "   15.9922,\n",
       "   16.9062,\n",
       "   14.0391,\n",
       "   22.0899,\n",
       "   26.9492,\n",
       "   144.1172,\n",
       "   15.8593,\n",
       "   402.918],\n",
       "  'description': ['bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg']},\n",
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       " 7: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/084/00008480/s004_2012_11_09/00008480_s004_t000.tse',\n",
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       "  'onset': [0.0, 742.0039, 1255.0, 1446.9922, 1662.0156],\n",
       "  'end': [742.0039, 1255.0, 1446.9922, 1662.0156, 1857.0],\n",
       "  'duration': [742.0039, 512.9961, 191.9922, 215.0234, 194.9844],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 37: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/118/00011870/s003_2014_08_13/00011870_s003_t002.tse',\n",
       "  'edf': <RawEDF | 00011870_s003_t002.edf, 21 x 235264 (919.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 406.9766, 913.9805],\n",
       "  'end': [406.9766, 913.9805, 919.0],\n",
       "  'duration': [406.9766, 507.0039, 5.0195],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 38: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/118/00011870/s003_2014_08_13/00011870_s003_t003.tse',\n",
       "  'edf': <RawEDF | 00011870_s003_t003.edf, 21 x 300544 (1174.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 248.0039, 249.0, 465.3281],\n",
       "  'end': [1.0, 248.0039, 249.0, 465.3281, 1174.0],\n",
       "  'duration': [1.0, 247.0039, 0.9961, 216.3281, 708.6719],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 39: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/119/00011972/s004_2014_09_17/00011972_s004_t001.tse',\n",
       "  'edf': <RawEDF | 00011972_s004_t001.edf, 21 x 164608 (643.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 60.9961, 177.3633, 231.2383, 336.5391, 390.9883, 506.5273],\n",
       "  'end': [60.9961, 177.3633, 231.2383, 336.5391, 390.9883, 506.5273, 643.0],\n",
       "  'duration': [60.9961,\n",
       "   116.3672,\n",
       "   53.875,\n",
       "   105.3008,\n",
       "   54.4492,\n",
       "   115.539,\n",
       "   136.4727],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 40: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/119/00011972/s004_2014_09_17/00011972_s004_t003.tse',\n",
       "  'edf': <RawEDF | 00011972_s004_t003.edf, 21 x 288512 (1127.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 291.9883, 400.5352, 785.0586, 891.4414],\n",
       "  'end': [291.9883, 400.5352, 785.0586, 891.4414, 1127.0],\n",
       "  'duration': [291.9883, 108.5469, 384.5234, 106.3828, 235.5586],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 41: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/119/00011972/s006_2014_09_17/00011972_s006_t001.tse',\n",
       "  'edf': <RawEDF | 00011972_s006_t001.edf, 21 x 233984 (914.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 102.8242, 189.0586, 886.9492, 913.0],\n",
       "  'end': [102.8242, 189.0586, 886.9492, 913.0, 914.0],\n",
       "  'duration': [102.8242, 86.2344, 697.8906, 26.0508, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 42: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/127/00012707/s003_2015_01_29/00012707_s003_t007.tse',\n",
       "  'edf': <RawEDF | 00012707_s003_t007.edf, 21 x 122112 (477.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 129.082, 142.0469],\n",
       "  'end': [129.082, 142.0469, 477.0],\n",
       "  'duration': [129.082, 12.9649, 334.9531],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 43: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/127/00012707/s003_2015_01_29/00012707_s003_t009.tse',\n",
       "  'edf': <RawEDF | 00012707_s003_t009.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 222.957, 240.0],\n",
       "  'end': [222.957, 240.0, 601.0],\n",
       "  'duration': [222.957, 17.043, 361.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 44: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s001_2015_04_26/00012940_s001_t003.tse',\n",
       "  'edf': <RawEDF | 00012940_s001_t003.edf, 21 x 547072 (2137.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 2136.0],\n",
       "  'end': [1.0, 2136.0, 2137.0],\n",
       "  'duration': [1.0, 2135.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 45: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s002_2015_04_26/00012940_s002_t002.tse',\n",
       "  'edf': <RawEDF | 00012940_s002_t002.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 600.0],\n",
       "  'end': [1.0, 600.0, 601.0],\n",
       "  'duration': [1.0, 599.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 46: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s002_2015_04_26/00012940_s002_t005.tse',\n",
       "  'edf': <RawEDF | 00012940_s002_t005.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 299.0],\n",
       "  'end': [1.0, 299.0, 300.0],\n",
       "  'duration': [1.0, 298.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 47: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s002_2015_04_26/00012940_s002_t006.tse',\n",
       "  'edf': <RawEDF | 00012940_s002_t006.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 600.0],\n",
       "  'end': [1.0, 600.0, 601.0],\n",
       "  'duration': [1.0, 599.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 48: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s002_2015_04_26/00012940_s002_t008.tse',\n",
       "  'edf': <RawEDF | 00012940_s002_t008.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 299.0],\n",
       "  'end': [1.0, 299.0, 300.0],\n",
       "  'duration': [1.0, 298.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 49: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s002_2015_04_26/00012940_s002_t009.tse',\n",
       "  'edf': <RawEDF | 00012940_s002_t009.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 600.0],\n",
       "  'end': [1.0, 600.0, 601.0],\n",
       "  'duration': [1.0, 599.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 50: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s003_2015_04_27/00012940_s003_t000.tse',\n",
       "  'edf': <RawEDF | 00012940_s003_t000.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 299.0],\n",
       "  'end': [1.0, 299.0, 300.0],\n",
       "  'duration': [1.0, 298.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 51: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s003_2015_04_27/00012940_s003_t001.tse',\n",
       "  'edf': <RawEDF | 00012940_s003_t001.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 600.0],\n",
       "  'end': [1.0, 600.0, 601.0],\n",
       "  'duration': [1.0, 599.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 52: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s003_2015_04_27/00012940_s003_t002.tse',\n",
       "  'edf': <RawEDF | 00012940_s003_t002.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 299.0],\n",
       "  'end': [1.0, 299.0, 300.0],\n",
       "  'duration': [1.0, 298.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 53: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s003_2015_04_27/00012940_s003_t004.tse',\n",
       "  'edf': <RawEDF | 00012940_s003_t004.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 299.0],\n",
       "  'end': [1.0, 299.0, 300.0],\n",
       "  'duration': [1.0, 298.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 54: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s003_2015_04_27/00012940_s003_t005.tse',\n",
       "  'edf': <RawEDF | 00012940_s003_t005.edf, 21 x 163328 (638.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 637.0],\n",
       "  'end': [1.0, 637.0, 638.0],\n",
       "  'duration': [1.0, 636.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 55: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012941/s002_2015_04_19/00012941_s002_t000.tse',\n",
       "  'edf': <RawEDF | 00012941_s002_t000.edf, 21 x 76800 (300.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 61.082, 299.0],\n",
       "  'end': [61.082, 299.0, 300.0],\n",
       "  'duration': [61.082, 237.918, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 56: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012941/s002_2015_04_19/00012941_s002_t001.tse',\n",
       "  'edf': <RawEDF | 00012941_s002_t001.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 1.0, 600.0],\n",
       "  'end': [1.0, 600.0, 601.0],\n",
       "  'duration': [1.0, 599.0, 1.0],\n",
       "  'description': ['bckg', 'gnsz', 'bckg']},\n",
       " 57: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012941/s002_2015_04_19/00012941_s002_t006.tse',\n",
       "  'edf': <RawEDF | 00012941_s002_t006.edf, 21 x 153856 (601.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0, 27.3828, 255.8242, 274.4727, 324.0859],\n",
       "  'end': [27.3828, 255.8242, 274.4727, 324.0859, 601.0],\n",
       "  'duration': [27.3828, 228.4414, 18.6485, 49.6132, 276.9141],\n",
       "  'description': ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']},\n",
       " 58: {'path': 'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012941/s002_2015_04_19/00012941_s002_t007.tse',\n",
       "  'edf': <RawEDF | 00012941_s002_t007.edf, 21 x 258816 (1011.0 s), ~25 kB, data not loaded>,\n",
       "  'onset': [0.0,\n",
       "   249.0117,\n",
       "   373.9297,\n",
       "   518.9609,\n",
       "   528.7148,\n",
       "   549.7734,\n",
       "   586.5625,\n",
       "   648.4453,\n",
       "   666.0039,\n",
       "   685.293,\n",
       "   1010.0],\n",
       "  'end': [249.0117,\n",
       "   373.9297,\n",
       "   518.9609,\n",
       "   528.7148,\n",
       "   549.7734,\n",
       "   586.5625,\n",
       "   648.4453,\n",
       "   666.0039,\n",
       "   685.293,\n",
       "   1010.0,\n",
       "   1011.0],\n",
       "  'duration': [249.0117,\n",
       "   124.918,\n",
       "   145.0312,\n",
       "   9.7539,\n",
       "   21.0586,\n",
       "   36.7891,\n",
       "   61.8828,\n",
       "   17.5586,\n",
       "   19.2891,\n",
       "   324.707,\n",
       "   1.0],\n",
       "  'description': ['bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg',\n",
       "   'gnsz',\n",
       "   'bckg']}}"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gnsz_eeg_annot"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/129/00012940/s001_2015_04_26/00012940_s001_t003.tse'"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Channels marked as bad: none\n"
     ]
    }
   ],
   "source": [
    "eg = gnsz_eeg_annot[44]\n",
    "annotations = mne.Annotations(eg['onset'],eg['duration'],eg['description'])\n",
    "raw_temp = eg['edf'].copy()\n",
    "raw_temp.set_annotations(annotations)\n",
    "raw_temp.plot()\n",
    "eg['path']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "\n",
       "<table class=\"table table-hover\">\n",
       "    <tr>\n",
       "        <th>Measurement date</th>\n",
       "        <td>April 26, 2015  11:41:01 GMT</td>\n",
       "        \n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Experimenter</th>\n",
       "<td>Unknown</td>\n",
       "    </tr>\n",
       "        <th>Participant</th>\n",
       "<td>Unknown</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Digitized points</th>\n",
       "        <td>Not available</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Good channels</th>\n",
       "        <td>0 magnetometer, 0 gradiometer,\n",
       "            and 21 EEG channels</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Bad channels</th>\n",
       "        <td></td>\n",
       "        \n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>EOG channels</th>\n",
       "        <td>Not available</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>ECG channels</th>\n",
       "        <td>Not available</td>\n",
       "    <tr>\n",
       "        <th>Sampling frequency</th>\n",
       "        <td>256.00 Hz</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Highpass</th>\n",
       "        <td>0.00 Hz</td>\n",
       "    </tr>\n",
       "     <tr>\n",
       "        <th>Lowpass</th>\n",
       "        <td>128.00 Hz</td>\n",
       "    </tr>\n",
       "\n",
       "    <tr>\n",
       "        <th>Filenames</th>\n",
       "        <td>00012940_s001_t003.edf</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "        <th>Duration</th>\n",
       "        <td>00:35:36 (HH:MM:SS)</td>\n",
       "    </tr>\n",
       "</table>\n"
      ],
      "text/plain": [
       "<RawEDF | 00012940_s001_t003.edf, 21 x 547072 (2137.0 s), ~25 kB, data not loaded>"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "raw_temp"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "gnsz_data = pd.DataFrame.from_dict(gnsz_eeg_annot)\n",
    "gnsz_data.to_csv(\"gnsz_eeg.csv\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "read_gnsz = pd.read_csv('gnsz_eeg.csv', index_col=['Unnamed: 0'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 191,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "path           D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/...\n",
       "edf            <RawEDF | 00011870_s003_t002.edf, 21 x 235264 ...\n",
       "onset                                  [0.0, 406.9766, 913.9805]\n",
       "end                                  [406.9766, 913.9805, 919.0]\n",
       "duration                            [406.9766, 507.0039, 5.0195]\n",
       "description                             ['bckg', 'gnsz', 'bckg']\n",
       "Name: 37, dtype: object"
      ]
     },
     "execution_count": 191,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "read_gnsz.iloc[:,36][0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "\"['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg', 'gnsz', 'bckg', 'gnsz', 'bckg', 'gnsz', 'bckg']\""
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "read_gnsz.iloc[:,0][5]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/044/00004456/s015_2014_06_19/00004456_s015_t002.tse'"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "read_gnsz.iloc[:,0][0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "path           D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/...\n",
       "edf            <RawEDF | 00004456_s015_t002.edf, 21 x 284928 ...\n",
       "onset          [0.0, 325.0234, 353.9688, 454.1289, 470.1211, ...\n",
       "end            [325.0234, 353.9688, 454.1289, 470.1211, 487.0...\n",
       "duration       [325.0234, 28.9454, 100.1601, 15.9922, 16.9062...\n",
       "description    ['bckg', 'gnsz', 'bckg', 'gnsz', 'bckg', 'gnsz...\n",
       "Name: 1, dtype: object"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "read_gnsz[str(1)]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "163\n"
     ]
    }
   ],
   "source": [
    "import ast\n",
    "c=0\n",
    "for iter in read_gnsz.columns:\n",
    "    for typ in ast.literal_eval(read_gnsz[str(iter)]['description']):\n",
    "        if typ == 'gnsz':\n",
    "            c = c+1\n",
    "print(c)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Extracting EDF parameters from D:\\TUH EEG Corpus\\tuh_eeg\\edf\\train\\01_tcp_ar\\044\\00004456\\s015_2014_06_19\\00004456_s015_t002.edf...\n",
      "EDF file detected\n",
      "Setting channel info structure...\n",
      "Creating raw.info structure...\n"
     ]
    }
   ],
   "source": [
    "raw = mne.io.read_raw_edf(\"D:/TUH EEG Corpus/tuh_eeg/edf/train/01_tcp_ar/044/00004456/s015_2014_06_19/00004456_s015_t002.edf\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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