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Faster download of database #5

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sokrypton opened this issue Sep 29, 2023 · 1 comment
Open

Faster download of database #5

sokrypton opened this issue Sep 29, 2023 · 1 comment
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wontfix This will not be worked on

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@sokrypton
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suggestion:

apt-get install aria2
aria2c -x 16 https://storage.googleapis.com/dm_alphamissense/AlphaMissense_aa_substitutions.tsv.gz

or just replacing with this URL should be faster:

https://storage.googleapis.com/dm_alphamissense/AlphaMissense_aa_substitutions.tsv.gz

from:
https://console.cloud.google.com/storage/browser/dm_alphamissense

@thorstenwagner
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thorstenwagner commented Sep 29, 2023

Hi,

thanks for the suggestions.

I would rather like to stick to the zenodo URL because the likelihood is higher that URL stays the same + the license of the file is clear. Moreover, a quick check with wget showed that ZENODO is actually faster (92MB/s) than the google storage (41MB/s).

However, this pull request adds an argument to use a tsv you downloaded. Would that be a workaround?

Best,
Thorsten

@thorstenwagner thorstenwagner added the wontfix This will not be worked on label Oct 8, 2023
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