pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "setuptools_scm>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "cryodrgn"
dynamic = ["version"]
authors = [
  { name="Ellen Zhong", email="zhonge@princeton.edu" }
]
description = "cryoDRGN heterogeneous reconstruction"
readme = "README.md"
requires-python = ">=3.9,<3.11"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Operating System :: POSIX :: Linux",
]
dependencies = [
    "torch>=1.0.0",
    "pandas<2",
    "numpy<1.23",
    "matplotlib<3.7",
    "pyyaml",
    "scipy>=1.3.1",
    "scikit-learn",
    "seaborn<0.12",
    "cufflinks",
    "jupyterlab",
    "notebook<7",
    "umap-learn",
    "ipywidgets<8",
    "healpy"
]

[project.optional-dependencies]
dev = [
    "build",
    "myst-parser",
    "pre-commit",
    "pyright==1.1.300",
    "pytest>=6",
    "sphinx",
    "sphinx-rtd-theme",
    "twine"
]

[project.scripts]
cryodrgn = "cryodrgn.command_line:main_commands"
cryodrgn_utils = "cryodrgn.command_line:util_commands"

[project.urls]
"Homepage" = "https://github.com/zhonge/cryodrgn"

[tool.setuptools_scm]
write_to = "cryodrgn/_version.py"

[tool.setuptools]
include-package-data = true
zip-safe = false

[tool.setuptools.packages.find]
where = ["."]
include = ["cryodrgn*"]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "-rA"
testpaths = [
    "tests"
]

[tool.pyright]
exclude = ["build/**"]