Rnaught is an R package and web application for estimating the basic reproduction number (R0) of infectious diseases.
An instance of the web application is available at https://immune.math.yorku.ca/Rnaught.
You can install the development version of Rnaught using the devtools package. Run the following commands in an R session:
install.packages("devtools") # If not already installed.
devtools::install_github("MI2YorkU/Rnaught", build_vignettes = TRUE)The package documentation is available online at https://MI2YorkU.github.io/Rnaught.
For a quick introduction, see the Get
started page.
This can also be accessed from an R session with
vignette("Rnaught", package = "Rnaught").
To view the documentation locally, run ?Rnaught::<function>. A list of
all functions is shown in the package index by executing
help(package = "Rnaught").
The source code for this package is available on GitHub.
To report a bug, request a new feature, give feedback, or ask questions, open a new issue.
Submit new estimators, features, bug fixes, or patches by creating a pull request.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see https://www.gnu.org/licenses.