Fix GitHub Actions for Publishing #27
Workflow file for this run
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| name: Full build and publish with versioning | |
| on: | |
| push: | |
| tags: | |
| - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| permissions: | |
| contents: write | |
| jobs: | |
| build-windows: | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18.13 | |
| - name: Get tag name | |
| shell: bash | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} # Remove "refs/tags/" from the beginning of the tag name | |
| NEW_VERSION="${VERSION}" | |
| node -p "let pkg=require('./package.json'); pkg.version='$NEW_VERSION'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));" | |
| - name: Print package.json | |
| run: Get-Content package.json | |
| - name: Install dependencies | |
| run: npm install | |
| - name: Setup Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: 1.21 | |
| - name: Build go | |
| run: | | |
| cd go_server | |
| go build main.go | |
| cd .. | |
| - name: Build for Windows | |
| run: npm run build:win | |
| - name: Get tag name | |
| id: get-tag | |
| shell: bash | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| echo "::set-output name=VERSION::${VERSION#v}" | |
| - name: Archive Windows | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: windows-built | |
| path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-win.exe | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| build-linux-ubuntu20: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18.13 | |
| - name: Get tag name | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| NEW_VERSION="${VERSION}" | |
| node -p "let pkg=require('./package.json'); pkg.version='$NEW_VERSION'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));" | |
| - name: Print package.json | |
| run: cat package.json | |
| - name: Install dependencies | |
| run: npm install | |
| - name: Setup Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: 1.21 | |
| - name: Build go | |
| run: | | |
| cd go_server | |
| go build main.go | |
| cd .. | |
| - name: Build for Linux | |
| run: npm run build:linux | |
| - name: Get tag name | |
| id: get-tag | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| echo "::set-output name=VERSION::${VERSION#v}" | |
| - name: Rename Linux | |
| run: mv ./build/dist/MEDomicsLab-${{ env.VERSION }}-linux.deb ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu20.deb | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| - name: Archive Linux | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: linux-built-ubuntu20 | |
| path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu20.deb | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| build-linux-ubuntu22: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18.13 | |
| - name: Get tag name | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| NEW_VERSION="${VERSION}" | |
| node -p "let pkg=require('./package.json'); pkg.version='$NEW_VERSION'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));" | |
| - name: Print package.json | |
| run: cat package.json | |
| - name: Install dependencies | |
| run: npm install | |
| - name: Setup Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: 1.21 | |
| - name: Build go | |
| run: | | |
| cd go_server | |
| go build main.go | |
| cd .. | |
| - name: Build for Linux | |
| run: npm run build:linux | |
| - name: Get tag name | |
| id: get-tag | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| echo "::set-output name=VERSION::${VERSION#v}" | |
| - name: Rename Linux | |
| run: mv ./build/dist/MEDomicsLab-${{ env.VERSION }}-linux.deb ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu22.deb | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| - name: Archive Linux | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: linux-built-ubuntu22 | |
| path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu22.deb | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| build-mac: | |
| runs-on: macos-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Setup Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: 1.21 | |
| - name: Build go | |
| run: | | |
| cd go_server | |
| go build main.go | |
| cd .. | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18.13 | |
| - name: Mac OS X with M1 chip | |
| run: uname -m | |
| - name: Install Python 2.7 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Bash python 1st try | |
| run: | | |
| echo $PATH | |
| python --version | |
| which python | |
| - name: Bash python 2nd try | |
| run: | | |
| echo $PATH | |
| python --version | |
| which python | |
| shell: bash {0} | |
| - name: Bash python 3rd try | |
| run: | | |
| echo $PATH | |
| python --version | |
| which python | |
| shell: bash -l {0} | |
| - name: Check if Python2.7 is installed | |
| run: | | |
| if ! which python2.7 > /dev/null; then | |
| curl -O https://www.python.org/ftp/python/2.7.18/python-2.7.18-macosx10.9.pkg | |
| sudo installer -pkg python-2.7.18-macosx10.9.pkg -target / | |
| else | |
| echo "Python 2.7 is already installed" | |
| fi | |
| - name: Install dependencies | |
| run: npm install | |
| - uses: actions/checkout@v4 | |
| - name: Cache node modules | |
| id: cache-npm | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-node-modules | |
| with: | |
| # npm cache files are stored in `~/.npm` on Linux/macOS | |
| path: ~/.npm | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-build-${{ env.cache-name }}- | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - if: ${{ steps.cache-npm.outputs.cache-hit != 'true' }} | |
| name: List the state of node modules | |
| continue-on-error: true | |
| run: npm list | |
| - name: Install dependencies | |
| run: npm install | |
| - name: Update version | |
| run: | | |
| node -p "let pkg=require('./package.json'); pkg.version='${GITHUB_REF/refs\/tags\//}'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));" | |
| echo "Version updated to ${GITHUB_REF/refs\/tags\//}" | |
| - name: Build for Mac | |
| run: npm run build:mac | |
| - name: Get tag name | |
| id: get-tag | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| echo "::set-output name=VERSION::${VERSION#v}" | |
| - name: Archive Mac | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: mac-built | |
| path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-mac.dmg | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} | |
| # Publish to GitHub | |
| publish: | |
| needs: [build-windows, build-linux-ubuntu22, build-linux-ubuntu20, build-mac] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Download Windows | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: windows-built | |
| - name: Download Linux Ubuntu20 | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: linux-built-ubuntu20 | |
| - name: Download Linux Ubuntu22 | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: linux-built-ubuntu22 | |
| - name: Download Mac | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: mac-built | |
| - name: Install zip | |
| run: sudo apt-get install zip | |
| - name: Move files out of pythonEnv - to root | |
| run: | | |
| mv ./pythonEnv/requirements.txt ./requirements.txt | |
| mv ./pythonEnv/requirements_mac.txt ./requirements_mac.txt | |
| mv ./pythonEnv/conda_env_osx64.yml ./conda_env_osx64.yml | |
| mv ./pythonEnv/create_conda_env_win.bat ./create_conda_env_win.bat | |
| mv ./pythonEnv/create_conda_env_linux.sh ./create_conda_env_linux.sh | |
| mv ./pythonEnv/create_conda_env_mac_yml.sh ./create_conda_env_mac_yml.sh | |
| mv ./pythonEnv/create_conda_env_mac.sh ./create_conda_env_mac.sh | |
| ls -R | |
| - name: zip Windows | |
| run: zip -r MEDomicsLab-PythonEnv-win.zip ./requirements.txt ./create_conda_env_win.bat | |
| - name: zip Linux | |
| run: zip -r MEDomicsLab-PythonEnv-linux.zip ./requirements.txt ./create_conda_env_linux.sh | |
| - name: zip Mac | |
| run: zip -r MEDomicsLab-PythonEnv-mac.zip ./conda_env_osx64.yml ./create_conda_env_mac_yml.sh ./create_conda_env_mac.sh ./requirements_mac.txt | |
| - name: Get tag name | |
| id: get-tag | |
| run: | | |
| VERSION=${GITHUB_REF/refs\/tags\//} | |
| echo "::set-output name=VERSION::${VERSION#v}" | |
| - name: Publish to GitHub | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: | | |
| ./MEDomicsLab-${{ env.VERSION }}-win.exe | |
| ./MEDomicsLab-${{ env.VERSION }}-ubuntu22.deb | |
| ./MEDomicsLab-${{ env.VERSION }}-ubuntu20.deb | |
| ./MEDomicsLab-${{ env.VERSION }}-mac.dmg | |
| ./MEDomicsLab-PythonEnv-win.zip | |
| ./MEDomicsLab-PythonEnv-linux.zip | |
| ./MEDomicsLab-PythonEnv-mac.zip | |
| name: MEDomicsLab-${{ env.VERSION }} | |
| body: | | |
| MEDomicsLab-${{ env.VERSION }} | |
| This is a full release of MEDomicsLab. This release includes the MEDomicsLab application and the Python environment. | |
| Refer to the [Documentation](https://medomics-udes.gitbook.io/medomicslab-docs/) | |
| ${{ github.ref }} | |
| draft: true | |
| prerelease: false | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| env: | |
| VERSION: ${{ steps.get-tag.outputs.VERSION }} |