diff --git a/AlotAddOnGUI/App.xaml.cs b/AlotAddOnGUI/App.xaml.cs
index c7a435d5..b3c79f1b 100644
--- a/AlotAddOnGUI/App.xaml.cs
+++ b/AlotAddOnGUI/App.xaml.cs
@@ -96,8 +96,9 @@ public App() : base()
                 Log.Information("In update mode. Update destination: " + updateDestinationPath);
                 Log.Information("Applying update");
                 CopyDir.CopyAll(new DirectoryInfo(System.AppDomain.CurrentDomain.BaseDirectory), new DirectoryInfo(updateDestinationPath));
-                Log.Information("Update files have been applied");
+                Log.Information("Update files have been applied.");
                 updateDestinationPath += "\\"; //add slash
+                Log.Information("Performing update migrations...");
                 if (Directory.Exists(updateDestinationPath + "MEM_Packages") && !Directory.Exists(updateDestinationPath + @"Data\MEM_Packages"))
                 {
                     Log.Information("Migrating MEM_Packages folder into subfolder");
@@ -112,22 +113,35 @@ public App() : base()
 
                 if (Directory.Exists(updateDestinationPath + "bin"))
                 {
-                    Log.Information("Deleting old top level bin folder");
-                    Directory.Delete(updateDestinationPath + "bin");
+                    Log.Information("Deleting old top level bin folder: "+(updateDestinationPath + "bin"));
+                    Utilities.DeleteFilesAndFoldersRecursively(updateDestinationPath + "bin");
                 }
 
                 if (Directory.Exists(updateDestinationPath + "lib"))
                 {
                     Log.Information("Deleting old top level lib folder");
-                    Directory.Delete(updateDestinationPath + "lib");
+                    Utilities.DeleteFilesAndFoldersRecursively(updateDestinationPath + "lib");
                 }
 
                 if (Directory.Exists(updateDestinationPath + "Extracted_Mods"))
                 {
                     Log.Information("Deleting leftover Extracted_Mods folder");
-                    Directory.Delete(updateDestinationPath + "Extracted_Mods");
+                    Utilities.DeleteFilesAndFoldersRecursively(updateDestinationPath + "Extracted_Mods");
                 }
-                
+
+                if (File.Exists(updateDestinationPath + "manifest.xml"))
+                {
+                    Log.Information("Deleting leftover manifest.xml file");
+                    File.Delete(updateDestinationPath + "manifest.xml");
+                }
+
+                if (File.Exists(updateDestinationPath + "manifest-bundled.xml"))
+                {
+                    Log.Information("Deleting leftover manifest-bundled.xml file");
+                    File.Delete(updateDestinationPath + "manifest-bundled.xml");
+                }
+
+                Log.Information("Rebooting into normal mode to complete update: " + updateDestinationPath + System.AppDomain.CurrentDomain.FriendlyName);
                 ProcessStartInfo psi = new ProcessStartInfo(updateDestinationPath + System.AppDomain.CurrentDomain.FriendlyName);
                 psi.WorkingDirectory = updateDestinationPath;
                 psi.Arguments = "--completing-update";
diff --git a/AlotAddOnGUI/MainWindow.xaml.cs b/AlotAddOnGUI/MainWindow.xaml.cs
index 7f5ddabd..ab0ba9c4 100644
--- a/AlotAddOnGUI/MainWindow.xaml.cs
+++ b/AlotAddOnGUI/MainWindow.xaml.cs
@@ -1908,7 +1908,7 @@ private async Task<bool> InstallPrecheck(int game)
 
             //Check game has been run at least once
             string configFile = IniSettingsHandler.GetConfigIniPath(game);
-            if (!File.Exists(configFile))
+            if (game == 1 && !File.Exists(configFile))
             {
                 //game has not been run yet.
                 Log.Error("Config file missing for Mass Effect " + game + ". Blocking install");