DESCRIPTION

Package: StellarPath
Type: Package
Title: Patient Classification based on Pathway-Specific Patient Similarity Networks
Version: 1.9.0
Author: Luca Giudice
Description: A patient classifier based on patient similarity networks that uses graph convolutional network to find disease-specific canonical pathways and non-coding target sets in multi-omics data
License: BSD 3-Clause License
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.0
VignetteBuilder: knitr
biocViews:
SystemRequirements: Python (>= 3.8)
Depends: R (>= 3.6.1),rlang,utils,stats,BiocManager,Biobase
Imports: reticulate (>= 1.24),doParallel (>= 1.0.17),foreach (>= 1.5.2),DT,scales (>= 1.2.0),miRBaseConverter (>= 1.18.0),countTransformers (>= 0.0.6),edgeR (>= 3.36.0),limma (>= 3.50.3),plyr (>= 1.8.7),data.table (>= 1.14.2),reshape2 (>= 1.4.4),igraph (>= 1.3.1),FNN (>= 1.1.3),qgraph (>= 1.9.2),Matrix (>= 1.4),Rfast (>= 2.0.6),matrixStats (>= 0.62.0),splitTools (>= 0.3.2),DescTools (>= 0.99.44),pROC (>= 1.18.0),
Suggests: ComplexHeatmap,ggridges,stringr,circlize,ggplot2,qs,DESeq2