diff --git a/Dockerfile b/Dockerfile index a786c2d..bd1733a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -69,20 +69,15 @@ RUN R -e "install.packages('tidyverse',dependencies=TRUE, repos='http://cran.rst # Install bcftools -RUN wget https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2 -RUN mv bcftools-1.9.tar.bz2 /opt/bcftools-1.9.tar.bz2 - -RUN tar -xf /opt/bcftools-1.9.tar.bz2 -C /opt/ && \ - rm /opt/bcftools-1.9.tar.bz2 && \ - cd /opt/bcftools-1.9 && \ +RUN wget https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2 +RUN mv bcftools-1.20.tar.bz2 /opt/bcftools-1.20.tar.bz2 +RUN tar -xf /opt/bcftools-1.20.tar.bz2 -C /opt/ && \ + rm /opt/bcftools-1.20.tar.bz2 && \ + cd /opt/bcftools-1.20 && \ ./configure && \ make && \ make install && \ - rm -rf /opt/bcftools-1.9 - -# Copy the pipeline into Docker image -COPY run /run/ -RUN chmod +x /run/proc.sh + rm -rf /opt/bcftools-1.20 # Install bedtools RUN wget https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary