diff --git a/Dockerfile b/Dockerfile index b0bd3f8..a6f4524 100644 --- a/Dockerfile +++ b/Dockerfile @@ -9,7 +9,7 @@ #FROM ubuntu:18.04 FROM ensemblorg/ensembl-vep:release_104.3 USER root -ENV DEBIAN_FRONTEND noninteractive +ENV DEBIAN_FRONTEND=noninteractive # Install dependencies RUN apt-get update && apt-get install -y \ @@ -38,7 +38,7 @@ RUN pip3 install -r /opt/requirements.txt RUN pip3 install bgzip # Install bcftools -RUN wget https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2 +RUN curl -OL https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2 RUN mv bcftools-1.20.tar.bz2 /opt/bcftools-1.20.tar.bz2 RUN tar -xf /opt/bcftools-1.20.tar.bz2 -C /opt/ && \ rm /opt/bcftools-1.20.tar.bz2 && \ @@ -49,7 +49,7 @@ RUN tar -xf /opt/bcftools-1.20.tar.bz2 -C /opt/ && \ rm -rf /opt/bcftools-1.20 # Install bedtools -RUN wget https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary +RUN curl -OL https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary RUN mv bedtools.static.binary /run/bedtools RUN chmod a+x /run/bedtools