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fix dockerfile slightly
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jylee-bcm committed Dec 18, 2024
1 parent ce6b975 commit 91d4879
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
#FROM ubuntu:18.04
FROM ensemblorg/ensembl-vep:release_104.3
USER root
ENV DEBIAN_FRONTEND noninteractive
ENV DEBIAN_FRONTEND=noninteractive

# Install dependencies
RUN apt-get update && apt-get install -y \
Expand Down Expand Up @@ -38,7 +38,7 @@ RUN pip3 install -r /opt/requirements.txt
RUN pip3 install bgzip

# Install bcftools
RUN wget https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2
RUN curl -OL https://github.com/samtools/bcftools/releases/download/1.20/bcftools-1.20.tar.bz2
RUN mv bcftools-1.20.tar.bz2 /opt/bcftools-1.20.tar.bz2
RUN tar -xf /opt/bcftools-1.20.tar.bz2 -C /opt/ && \
rm /opt/bcftools-1.20.tar.bz2 && \
Expand All @@ -49,7 +49,7 @@ RUN tar -xf /opt/bcftools-1.20.tar.bz2 -C /opt/ && \
rm -rf /opt/bcftools-1.20

# Install bedtools
RUN wget https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary
RUN curl -OL https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary
RUN mv bedtools.static.binary /run/bedtools
RUN chmod a+x /run/bedtools

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