diff --git a/main.nf b/main.nf index 84bed74..fa3f798 100644 --- a/main.nf +++ b/main.nf @@ -109,6 +109,7 @@ process NORMALIZE_VCF { exit 1 fi + tabix -p vcf input.unsorted.vcf.gz # to mitigate the header problem bcftools sort input.unsorted.vcf.gz -Oz -o input.vcf.gz tabix -p vcf input.vcf.gz """