Mitigate the header problem in NORMALIZE_VCF

LiuzLab · Sep 17, 2024 · 82f72f0 · 82f72f0
1 parent 6393991
commit 82f72f0
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/main.nf b/main.nf
@@ -109,6 +109,7 @@ process NORMALIZE_VCF {
         exit 1
     fi
 
+    tabix -p vcf input.unsorted.vcf.gz # to mitigate the header problem
     bcftools sort input.unsorted.vcf.gz -Oz -o input.vcf.gz
     tabix -p vcf input.vcf.gz
     """