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scenic_protocol.yml
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name: scenic_protocol
channels:
- anaconda
- r
- bioconda
- defaults
- conda-forge
dependencies:
- _r-mutex=1.0.1=anacondar_1
- blas=1.0=mkl
- blosc=1.16.3=hd9629dc_0
- bwidget=1.9.11=1
- bzip2=1.0.6=h1de35cc_5
- ca-certificates=2019.5.15=0
- cairo=1.14.12=hc4e6be7_4
- cctools=895=1
- certifi=2019.6.16=py36_1
- cffi=1.12.3=py36hccf1714_0
- clang=4.0.1=1
- clang_osx-64=4.0.1=h1ce6c1d_16
- clangxx=4.0.1=1
- clangxx_osx-64=4.0.1=h22b1bf0_16
- compiler-rt=4.0.1=hcfea43d_1
- curl=7.64.1=ha441bb4_0
- cycler=0.10.0=py36hfc81398_0
- cython=0.29.10=py36h0a44026_0
- cytoolz=0.9.0.1=py36h1de35cc_1
- et_xmlfile=1.0.1=py36h1315bdc_0
- fontconfig=2.13.1=h1027ab8_1000
- freetype=2.9.1=hb4e5f40_0
- fribidi=1.0.5=h1de35cc_0
- gettext=0.19.8.1=h46ab8bc_1002
- gfortran_osx-64=4.8.5=h22b1bf0_8
- glib=2.56.2=hd9629dc_0
- gmp=6.1.2=h0a44026_1000
- graphite2=1.3.13=h2098e52_0
- harfbuzz=1.8.8=hb8d4a28_0
- hdf5=1.10.4=hfa1e0ec_0
- icu=58.2=h0a44026_1000
- igraph=0.7.1=h0a67f88_1005
- intel-openmp=2019.4=233
- jdcal=1.4.1=py_0
- joblib=0.13.2=py36_0
- jpeg=9b=he5867d9_2
- kiwisolver=1.1.0=py36h0a44026_0
- krb5=1.16.1=hddcf347_7
- ld64=274.2=1
- libcurl=7.64.1=h051b688_0
- libcxx=4.0.1=hcfea43d_1
- libcxxabi=4.0.1=hcfea43d_1
- libedit=3.1.20181209=hb402a30_0
- libffi=3.2.1=1
- libgfortran=3.0.1=h93005f0_2
- libiconv=1.15=h01d97ff_1005
- libpng=1.6.37=ha441bb4_0
- libssh2=1.8.2=ha12b0ac_0
- libtiff=4.0.10=hcb84e12_2
- libxml2=2.9.9=hd80cff7_0
- llvm=4.0.1=1
- llvm-lto-tapi=4.0.1=1
- llvm-openmp=4.0.1=hcfea43d_1
- llvmlite=0.28.0=py36h8c7ce04_0
- louvain=0.6.1=py36h0a44026_2
- lz4-c=1.8.1.2=h1de35cc_0
- lzo=2.10=h362108e_2
- make=4.2.1=h3efe00b_1
- matplotlib=3.1.0=py36h54f8f79_0
- mkl=2019.4=233
- mkl-service=2.0.2=py36h1de35cc_0
- mkl_fft=1.0.12=py36h5e564d8_0
- mkl_random=1.0.2=py36h27c97d8_0
- mock=3.0.5=py36_0
- multicore-tsne=0.1_d4ff4aab=py36h3e44d54_0
- ncurses=6.1=h0a44026_1
- numba=0.43.1=py36h6440ff4_0
- numexpr=2.6.9=py36h7413580_0
- numpy=1.16.4=py36hacdab7b_0
- numpy-base=1.16.4=py36h6575580_0
- openpyxl=2.4.0=py36_0
- openssl=1.1.1c=h1de35cc_1
- pango=1.42.4=h060686c_0
- patsy=0.5.1=py36_0
- pcre=8.43=h0a44026_0
- pip=19.1.1=py36_0
- pixman=0.34.0=h1de35cc_1003
- pycairo=1.18.1=py36ha54c0a8_0
- pycparser=2.19=py36_1
- pyparsing=2.4.0=py_0
- pytables=3.5.2=py36h5bccee9_1
- python=3.6.8=haf84260_0
- python-dateutil=2.8.0=py36_0
- python-igraph=0.7.1.post7=py36h01d97ff_0
- pytz=2019.1=py_0
- r=3.6.0=r36_0
- r-base=3.6.0=hcb44179_0
- r-boot=1.3_20=r36h6115d3f_0
- r-class=7.3_15=r36h46e59ec_0
- r-cluster=2.0.8=r36hfffe0aa_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-foreign=0.8_71=r36h46e59ec_0
- r-kernsmooth=2.23_15=r36hfffe0aa_4
- r-lattice=0.20_38=r36h46e59ec_0
- r-mass=7.3_51.3=r36h46e59ec_0
- r-matrix=1.2_17=r36h46e59ec_0
- r-mgcv=1.8_28=r36h46e59ec_0
- r-nlme=3.1_139=r36hfffe0aa_0
- r-nnet=7.3_12=r36h46e59ec_0
- r-recommended=3.6.0=r36_0
- r-rpart=4.1_15=r36h46e59ec_0
- r-spatial=7.3_11=r36h46e59ec_4
- r-survival=2.44_1.1=r36h46e59ec_0
- readline=7.0=h1de35cc_5
- scikit-learn=0.21.2=py36h27c97d8_0
- seaborn=0.9.0=py36_0
- setuptools=41.0.1=py36_0
- six=1.12.0=py36_0
- snappy=1.1.7=he62c110_3
- sqlite=3.28.0=ha441bb4_0
- statsmodels=0.9.0=py36h1d22016_0
- tk=8.6.8=ha441bb4_0
- tktable=2.10=h1de35cc_0
- toolz=0.9.0=py36_0
- tornado=6.0.2=py36h1de35cc_0
- wheel=0.33.4=py36_0
- xz=5.2.4=h1de35cc_4
- zlib=1.2.11=h1de35cc_3
- zstd=1.3.7=h5bba6e5_0
- pip:
- anchor-bio==1.1.1
- anndata==0.6.21
- arboreto==0.1.5
- atomicwrites==1.3.0
- attrs==19.1.0
- biopython==1.73
- boltons==19.1.0
- click==7.0
- cloudpickle==1.2.1
- coverage==4.5.3
- dask==1.0.0
- decorator==4.4.0
- dill==0.2.9
- diptest==0.0.0
- distributed==1.28.1
- entrypoints==0.3
- flake8==3.7.7
- frozendict==1.2
- geoparse==1.1.0
- h5py==2.9.0
- heapdict==1.0.0
- importlib-metadata==0.18
- interlap==0.2.6
- loompy==2.0.17
- mccabe==0.6.1
- more-itertools==7.0.0
- msgpack==0.6.1
- multiprocessing-on-dill==3.5.0a4
- natsort==6.0.0
- networkx==2.3
- packaging==19.0
- pandas==0.23.4
- pluggy==0.12.0
- psutil==5.6.3
- py==1.8.0
- pyarrow==0.13.0
- pycodestyle==2.5.0
- pyflakes==2.1.1
- pyscenic==0.9.13
- pytest==4.6.3
- pytest-cov==2.7.1
- pyyaml==5.1.1
- scanpy==1.4.3
- scipy==1.3.0
- sortedcontainers==2.1.0
- tblib==1.4.0
- tqdm==4.32.1
- umap-learn==0.3.9
- unidip==0.1.1
- wgetter==0.7
- xlrd==1.2.0
- zict==0.1.4
- zipp==0.5.1
prefix: /Users/bramvandesande/miniconda3/envs/scenic_protocol