This is the public repository for "Aging desexualizes the Drosophila brain transcriptome".
- The Rmd/html notebook with the code is under
code/. - Raw data, along with Tissue Specificity data and other metadata, is under
data/ - Reproducibility information for data preprocessing (softwares versions, parameters and logs) is under
data/preprocessing
To download the repository, install git and run:
git clone https://github.com/urbfr20/aging_brain.git
Otherwise, it is possible to download the repository from the browser by clicking on the green "Code" button, then "Download Zip"
To reproduce the results in this work, install all necessary packages by downloading and setting up Miniconda here.
Then, run the following command from the repository base folder:
conda env create -f environment.yaml
Followed by:
conda activate aging_brain
Then, open rstudio (or similar) from the environment prompt:
(aging_brain):~/aging_brain$ rstudio code/Analysis.Rmd