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Merge pull request #5 from Lattice-Automation/modernize3
Modernize, simplify
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,11 @@ | ||
| FROM golang:1.18.3 | ||
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| RUN apt-get update && \ | ||
| apt-get install -y --no-install-recommends \ | ||
| ncbi-blast+ \ | ||
| primer3 | ||
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| WORKDIR $HOME/src | ||
| ADD . . | ||
| RUN go install ./cmd/repp | ||
| ENTRYPOINT ["repp"] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,97 +1,33 @@ | ||
| LOCAL_BIN=/usr/local/bin | ||
| APP=${LOCAL_BIN}/repp | ||
| APP_DATA=$${HOME}/.repp | ||
| SETTINGS=./config/config.yaml | ||
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| NAME=repp | ||
| VERSION=0.1.0 | ||
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| DIST_WIN_ZIP=${NAME}_windows_${VERSION}.zip | ||
| DIST_SRC=${NAME}_src_${VERSION} | ||
| DIST_SRC_TAR=${DIST_SRC}.tar.gz | ||
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| PLATFORM:=$(shell uname) | ||
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| .PHONY: test dist docs | ||
| .DEFAULT_GOAL: build | ||
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| ifeq ($(PLATFORM),Windows_NT) | ||
| $(error Windows not supported via make) | ||
| endif | ||
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| build: | ||
| go get -d | ||
| env GOOS=linux go build -o ./bin/linux -v | ||
| env GOOS=darwin go build -o ./bin/darwin -v | ||
| env GOOS=windows go build -o ./bin/repp.exe -v | ||
| .PHONY: build | ||
| build: fmt lint | ||
| go mod tidy | ||
| go mod vendor | ||
| go build -o ./bin/repp ./cmd/repp | ||
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| .PHONY: install | ||
| install: | ||
| mkdir -p $(APP_DATA) | ||
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| cp $(SETTINGS) $(APP_DATA)/config.yaml | ||
| cp -r ./vendor/primer3_config $(APP_DATA) | ||
| cp -r ./assets/addgene/db/** $(APP_DATA) | ||
| cp -r ./assets/igem/db/** $(APP_DATA) | ||
| cp -r ./assets/dnasu/db/** $(APP_DATA) | ||
| cp ./assets/snapgene/features.tsv $(APP_DATA) | ||
| cp ./assets/neb/enzymes.tsv $(APP_DATA) | ||
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| ifeq ($(PLATFORM),Linux) | ||
| install ./bin/linux $(APP) | ||
| install -C ./vendor/linux/blastn $(LOCAL_BIN) | ||
| install -C ./vendor/linux/ntthal $(LOCAL_BIN) | ||
| install -C ./vendor/linux/primer3_core $(LOCAL_BIN) | ||
| install -C ./vendor/linux/blastdbcmd $(LOCAL_BIN) | ||
| endif | ||
| go install ./cmd/repp | ||
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| ifeq ($(PLATFORM),Darwin) | ||
| install ./bin/darwin $(APP) | ||
| install -C ./vendor/darwin/blastn $(LOCAL_BIN) | ||
| install -C ./vendor/darwin/ntthal $(LOCAL_BIN) | ||
| install -C ./vendor/darwin/primer3_core $(LOCAL_BIN) | ||
| install -C ./vendor/darwin/blastdbcmd $(LOCAL_BIN) | ||
| endif | ||
| .PHONY: image | ||
| image: | ||
| docker build -t jjtimmons/repp:latest . | ||
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| windows: build | ||
| cd scripts && makensis windows_installer.nsi | ||
| image/push: image | ||
| docker push jjtimmons/repp:latest | ||
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| all: build install | ||
| .PHONY: test | ||
| test: | ||
| go test -timeout 200s ./internal/... | ||
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| dbs: | ||
| cd assets && sh makeblastdbs.sh | ||
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| uninstall: clean | ||
| rm $(APP) | ||
| rm -rf $(APP_DATA) | ||
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| test: all | ||
| go test -timeout 200s ./internal/repp | ||
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| dist-dir: | ||
| mkdir -p ${DIST_SRC} | ||
| rsync -r --delete\ | ||
| --exclude={'.git','dist','test','scripts','bin/repp_install.exe','bin/repp.exe','vendor/windows','assets/addgene/addgene.json','assets/dnasu/DNASU*','assets/igem/xml*','assets/neb/*/'}\ | ||
| . ${DIST_SRC} | ||
| tar -czf ${DIST_SRC_TAR} ${DIST_SRC} | ||
| rm -rf ${DIST_SRC} | ||
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| dist: windows dist-dir | ||
| cp ./README.md ./docs/index.md | ||
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| zip ${DIST_WIN_ZIP} ./bin/repp_install.exe | ||
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| scp ${DIST_SRC_TAR} jjtimmons@frs.sourceforge.net:/home/frs/project/repplasmid/ | ||
| scp ${DIST_WIN_ZIP} jjtimmons@frs.sourceforge.net:/home/frs/project/repplasmid/ | ||
| .PHONY: docs | ||
| docs: | ||
| cd docs && make | ||
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| rm ${DIST_SRC_TAR} | ||
| rm ${DIST_WIN_ZIP} | ||
| docs/serve: docs | ||
| cd docs && make serve | ||
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| docs: | ||
| go run . docs | ||
| cp README.md ./docs/index.md | ||
| cd docs && bundle exec just-the-docs rake search:init | ||
| find ./docs -name *make* -type f -exec sed -i -e 's/\/Users\/josh/~/g' {} \; | ||
| rm ./docs/*-e | ||
| fmt: | ||
| gofmt -l ./internal | ||
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| docs-dev: docs | ||
| cd docs && bundle exec jekyll serve | ||
| lint: | ||
| golangci-lint run |
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