v2.0.1

What's Changed

• Tutorial refine by @liuyangzzu in #149
• Loose env dependency by @liuyangzzu in #150
• DSL2 modules by @liuyangzzu in #151
• Add header to NF files by @liuyangzzu in #152
• condition for running process by @liuyangzzu in #153
• Add weight model by @liuyangzzu in #154
• update guppy to latest by @liuyangzzu in #156

Full Changelog: v2.0.0...v2.0.1

NANOME v2.0.0

What's Changed

• Xgboost by @liuyangzzu in #146
• tutorial refine by @liuyangzzu in #148

Full Changelog: v1.3.9...v2.0.0

NANOME v1.3.9

What's Changed

• Cloud computing params by @liuyangzzu in #145

Full Changelog: v1.3.8...v1.3.9

NANOME v1.3.8

Main updates

• Guppy v6
• Megalodon use Remora model as default
• Support add new module/tool in config TXT file

What's Changed

• Robust params by @liuyangzzu in #139
• Robust params by @liuyangzzu in #140
• Demo script by @liuyangzzu in #141
• pypi version by @liuyangzzu in #142
• Support add new tool by @liuyangzzu in #143
• upgrade guppy to 6.0.1 by @liuyangzzu in #144

Full Changelog: v1.3.7...v1.3.8

NANOME v1.3.7

New features in NANOME v1.3.7

• XGBoost model consensus of reads by any of top three tools
• update megalodon to v2.4.1
• support basecalled input and any reference genome

What's Changed

• Robust params by @liuyangzzu in #139
• Robust params by @liuyangzzu in #140
• Demo script by @liuyangzzu in #141
• pypi version by @liuyangzzu in #142

Full Changelog: v1.3.7...v1.3.7_m5

NANOME v1.3.6

Main updates

• Using DSL2 pipeline
• Update guppy version to 5.0.16
• Support both Lifebit CloudOS and Google Cloud Platform (GCP)

What's Changed

• update Rshiny by @PanZiwei in #124
• NANOME consensus by @liuyangzzu in #123
• Compatible to Lifebit CloudOS for DSL2 by @liuyangzzu in #125
• add genome browser bigwig output by @liuyangzzu in #126
• Enhance process by @liuyangzzu in #127

Full Changelog: v1.3.5...v1.3.6

NANOME v1.3.5

What's Changed

• Lifebit cloudOS test by @liuyangzzu in #116
• Add author copyright by @liuyangzzu in #117
• simplify params used in pipeline by @liuyangzzu in #118
• evaluation doc by @liuyangzzu in #119
• Enhance pipeline by @liuyangzzu in #120
• Enhance docker by @liuyangzzu in #121

NANOME v1.3.4

What's Changed

• Multi-processing function for read/site level evaluation by @liuyangzzu in #112
• enhance pipeline by @liuyangzzu in #113
• Single report html by @liuyangzzu in #114
• update docs by @liuyangzzu in #115

NANOME v1.3.2

What's Changed

• Add Lifebit platform configurations by @liuyangzzu in #104
• add CI test case for human data by @liuyangzzu in #105
• Resolve local path by @liuyangzzu in #107
• Minimize docker by @liuyangzzu in #108
• Lifebit running enhance by @liuyangzzu in #109
• add to conda package by @liuyangzzu in #110

Full Changelog: v1.3.0...v1.3.2

NANOME v1.3.0

NANOME pipeline methylation calling for Oxford Nanopore sequencing data

• support latest Guppy (v5.0.14) and Megalodon (v2.3.4) version
• support conda, docker, and singularity
• support local, hpc and google cloud computing execution