Feature/gebcoimport

.classpath

@@ -73,6 +73,7 @@
 	<classpathentry kind="src" path="plugins-dev/arcgis-maps"/>
 	<classpathentry kind="src" path="plugins-dev/soi"/>
 	<classpathentry kind="src" path="plugins-dev/hmapping"/>
+	<classpathentry kind="src" path="plugins-dev/gebcoimport"/>
 	<classpathentry kind="lib" path="lib/log4j-1.2.17.jar"/>
 	<classpathentry kind="lib" path="lib/xerces-2.7.1/xml-apis.jar"/>
 	<classpathentry kind="lib" path="lib/xerces-2.7.1/xercesImpl.jar"/>

conf/consoles/lauv.ncon

@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <console name="Neptus Console" width="1366" height="727" resizable="true" mission-file="../../missions/APDL/missao-apdl.nmisz" main-vehicle="lauv-xplore-1">
-  <!-- Data saved on 2018-04-07T11:57:44.0Z with Neptus version 2018.01.1-dev (compiled on 2018-04-05, gtag/20170721-rep17-arpao-337-gd346a79-dirty). -->
+  <!-- Data saved on 2018-04-23T21:56:49.0Z with Neptus version @VERSION@ (compiled on @DATE@, g@SCM_REV@). -->
   <mainpanel name="console main panel">
-    <subpanel class="pt.lsts.neptus.console.plugins.containers.MigLayoutContainer" x="0" y="0" width="1360" height="643">
+    <subpanel class="pt.lsts.neptus.console.plugins.containers.MigLayoutContainer" x="0" y="0" width="1366" height="641">
       <properties>
         <entry key="XML Definitions">&lt;profiles&gt;
   &lt;profile name="Normal"&gt;
@@ -87,21 +87,19 @@
       <child class="pt.lsts.neptus.plugins.map.MapEditor" x="0" y="0" width="0" height="0">
         <properties/>
       </child>
-      <child class="pt.lsts.neptus.console.plugins.planning.MapPanel" x="0" y="0" width="1054" height="643">
+      <child class="pt.lsts.neptus.console.plugins.planning.MapPanel" x="0" y="0" width="1060" height="641">
         <properties>
           <entry key="World Map Transparency">false</entry>
         </properties>
       </child>
-      <child class="pt.lsts.neptus.console.plugins.planning.MissionTreePanel" x="0" y="162" width="294" height="475">
+      <child class="pt.lsts.neptus.console.plugins.planning.MissionTreePanel" x="0" y="162" width="294" height="473">
         <properties/>
       </child>
       <child class="pt.lsts.neptus.console.plugins.planning.MultiVehiclePlanOverlay" x="0" y="0" width="0" height="0">
         <properties/>
       </child>
       <child class="pt.lsts.neptus.console.plugins.MyLocationDisplay" x="0" y="0" width="0" height="0">
-        <properties>
-          <entry key="Location">N38.44020556°, W9.11050278°</entry>
-        </properties>
+        <properties/>
       </child>
       <child class="pt.lsts.neptus.plugins.oplimits.OperationLimitsSubPanel" x="0" y="0" width="95" height="40">
         <properties/>
@@ -158,6 +156,9 @@ altitude: ${EstimatedState.alt};
       <child class="pt.lsts.neptus.plugins.sunfish.iridium.feedback.IridiumStatus" x="0" y="0" width="0" height="0">
         <properties/>
       </child>
+      <child class="pt.lsts.neptus.plugins.datacdf.Datacdf" x="0" y="0" width="0" height="0">
+        <properties/>
+      </child>
     </subpanel>
   </mainpanel>
   <mainpanel name="console alarm panel"/>
@@ -181,10 +182,10 @@ altitude: ${EstimatedState.alt};
     <layer class="pt.lsts.neptus.console.plugins.planning.PlanSimulationLayer" opacity="1.0">
       <properties/>
     </layer>
-    <layer class="pt.lsts.neptus.plugins.position.painter.SystemInfoPainter" opacity="1.0">
+    <layer class="pt.lsts.ripples.RipplesPositions" opacity="1.0">
       <properties/>
     </layer>
-    <layer class="pt.lsts.ripples.RipplesPositions" opacity="1.0">
+    <layer class="pt.lsts.neptus.plugins.position.painter.SystemInfoPainter" opacity="1.0">
       <properties/>
     </layer>
   </layers>

plugins-dev/gebcoimport/plugins.lst

@@ -0,0 +1 @@
+pt.lsts.neptus.plugins.gebcoimport.GebcoBathymetryImport

plugins-dev/gebcoimport/pt/lsts/neptus/plugins/gebcoimport/GebcoBathymetryImport.java

@@ -0,0 +1,248 @@
+/*
+ * Copyright (c) 2004-2018 Universidade do Porto - Faculdade de Engenharia
+ * Laboratório de Sistemas e Tecnologia Subaquática (LSTS)
+ * All rights reserved.
+ * Rua Dr. Roberto Frias s/n, sala I203, 4200-465 Porto, Portugal
+ *
+ * This file is part of Neptus, Command and Control Framework.
+ *
+ * Commercial Licence Usage
+ * Licencees holding valid commercial Neptus licences may use this file
+ * in accordance with the commercial licence agreement provided with the
+ * Software or, alternatively, in accordance with the terms contained in a
+ * written agreement between you and Universidade do Porto. For licensing
+ * terms, conditions, and further information contact lsts@fe.up.pt.
+ *
+ * Modified European Union Public Licence - EUPL v.1.1 Usage
+ * Alternatively, this file may be used under the terms of the Modified EUPL,
+ * Version 1.1 only (the "Licence"), appearing in the file LICENSE.md
+ * included in the packaging of this file. You may not use this work
+ * except in compliance with the Licence. Unless required by applicable
+ * law or agreed to in writing, software distributed under the Licence is
+ * distributed on an "AS IS" basis, WITHOUT WARRANTIES OR CONDITIONS OF
+ * ANY KIND, either express or implied. See the Licence for the specific
+ * language governing permissions and limitations at
+ * https://github.com/LSTS/neptus/blob/develop/LICENSE.md
+ * and http://ec.europa.eu/idabc/eupl.html.
+ *
+ * For more information please see <http://lsts.fe.up.pt/neptus>.
+ *
+ * Author: nachito
+ * 23/04/2018
+ */
+package pt.lsts.neptus.plugins.gebcoimport;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.io.File;
+import java.io.IOException;
+import java.util.HashMap;
+import java.util.Map;
+
+
+import javax.swing.JFileChooser;
+import pt.lsts.neptus.console.ConsoleLayout;
+import pt.lsts.neptus.console.ConsolePanel;
+import pt.lsts.neptus.console.plugins.planning.SimulatedBathymetry;
+import pt.lsts.neptus.data.Pair;
+import pt.lsts.neptus.i18n.I18n;
+import pt.lsts.neptus.plugins.PluginDescription;
+import pt.lsts.neptus.plugins.PluginUtils;
+import pt.lsts.neptus.types.coord.LocationType;
+import pt.lsts.neptus.util.AngleUtils;
+import pt.lsts.neptus.util.ConsoleParse;
+import pt.lsts.neptus.util.ImageUtils;
+import pt.lsts.neptus.util.netcdf.NetCDFUtils;
+import ucar.ma2.Array;
+import ucar.nc2.NetcdfFile;
+import ucar.nc2.Variable;
+
+@PluginDescription(name = "NetCDF Tools")
+public class GebcoBathymetryImport extends ConsolePanel {
+
+    /**
+     * 
+     */
+    private static final long serialVersionUID = 1L;
+
+
+
+    /**
+     * 
+     */
+
+    /**
+     * @param console
+     */
+
+    // TODO Auto-generated method stub
+
+    public GebcoBathymetryImport(ConsoleLayout console) {
+
+        super(console);
+    }
+
+    /*
+     * (non-Javadoc)
+     * 
+     * @see pt.lsts.neptus.console.ConsolePanel#cleanSubPanel()
+     */
+    @Override
+    public void cleanSubPanel() {
+        removeMenuItem(I18n.text("Tools") + ">" + I18n.text("NetCDF"));
+
+    }
+
+    /*
+     * (non-Javadoc)
+     * 
+     * @see pt.lsts.neptus.console.ConsolePanel#initSubPanel()
+     */
+    @Override
+    public void initSubPanel() {
+
+
+        addMenuItem(I18n.text("Tools") + ">" + I18n.text("NetCDF"),
+                ImageUtils.getIcon(PluginUtils.getPluginIcon(getClass())), new ActionListener() {
+
+            @Override
+            public void actionPerformed(ActionEvent e) {
+
+
+                JFileChooser fileChooser = new JFileChooser();
+                int returnValue = fileChooser.showOpenDialog(null);
+                if (returnValue == JFileChooser.APPROVE_OPTION) {
+                    File selectedFile = fileChooser.getSelectedFile();
+
+
+                    NetcdfFile dataFile = null;
+                    try {
+                        dataFile = NetcdfFile.open(selectedFile.getAbsolutePath());
+                        System.out.println(dataFile.toString());
+                        Pair<String, Variable> searchPair = NetCDFUtils.findVariableForStandardNameOrName(
+                                dataFile, selectedFile.getAbsolutePath(), true, "latitude", "lat");
+
+                        Variable latVar = searchPair.second();
+
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), true, "longitude", "lon");
+                        Variable lonVar = searchPair.second();
+
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), true, "elevation",
+                                "height_above_reference_ellipsoid");
+                        Variable elevVar = searchPair.second();
+
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), true, "time");
+                        Variable timeVar = searchPair == null ? null : searchPair.second();
+
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), false, "depth", "altitude");
+                        Variable depthOrAltitudeVar = searchPair == null ? null : searchPair.second();
+
+                        // Get the u (north) wind velocity Variables.
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), false, "x_wind", "grid_eastward_wind", "u");
+                        Variable uVar = searchPair == null ? null : searchPair.second();
+
+                        // Get the v (east) wind velocity Variables.
+                        searchPair = NetCDFUtils.findVariableForStandardNameOrName(dataFile,
+                                selectedFile.getAbsolutePath(), false, "y_wind", "grid_northward_wind", "v");
+                        Variable vVar = searchPair == null ? null : searchPair.second();
+
+                        if (latVar == null) {
+                            System.out.println("Cant find Variable latitude");
+                        }
+                        if (lonVar == null) {
+                            System.out.println("Cant find Variable longitude");
+                        }
+                        if (timeVar == null) {
+                            System.out.println("Cant find Variable time");
+                        }
+                        if (uVar == null) {
+                            System.out.println("Cant find Variable xWind");
+                        }
+                        if (vVar == null) {
+                            System.out.println("Cant find Variable yWind");
+                        }
+                        if (elevVar == null) {
+                            System.out.println("Cant find Variable elevation");
+                        }
+
+                        if (depthOrAltitudeVar == null) {
+                            System.out.println("Cant find Variable depth or altitude");
+
+                        }
+
+                        //TODO add u and v
+                        // Get the lat/lon data from the file.
+                        Array latArray; // ArrayFloat.D1
+                        Array lonArray; // ArrayFloat.D1
+                        Array elevArray;
+
+                        latArray = latVar.read();
+                        lonArray = lonVar.read();
+                        elevArray = elevVar.read();
+
+
+
+                        double lat = 0;
+                        double lon = 0;
+                        double elev=0;
+
+
+                        Map<LocationType, Double> data= new HashMap<>();
+
+
+                        for(int i = 0; i < elevArray.getSize(); i++) {
+                            lat = AngleUtils.nomalizeAngleDegrees180((latArray.getDouble((int) (i/lonArray.getSize()))));
+
+                            lon = AngleUtils.nomalizeAngleDegrees180(lonArray.getDouble((int) (i%lonArray.getSize())));
+
+                            elev = elevArray.getDouble(i);
+                            LocationType l = new LocationType();
+                            l.setLatitudeDegs(lat);
+                            l.setLongitudeDegs(lon);
+                            l.setDepth(elev);
+                            System.out.println("l: " + l);
+
+                            data.put(l, l.getDepth());
+                        }
+
+
+                        SimulatedBathymetry.getInstance().addSoundings(data);
+
+                    }
+                    catch (java.io.IOException e1) {
+                        System.out.println(" fail = " + e1);
+                        e1.printStackTrace();
+                    }
+                    catch (Exception e1) {
+                        e1.printStackTrace();
+                    }
+                    finally {
+                        if (dataFile != null)
+                            try {
+                                dataFile.close();
+                            }
+                        catch (IOException ioe) {
+                            ioe.printStackTrace();
+                        }
+                    }
+
+                }
+
+
+
+            }
+        });
+
+    }
+
+
+
+    public static void main(String[] args) {
+        ConsoleParse.testSubPanel(GebcoBathymetryImport.class);
+    }
+}