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0.4.0

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@ArtsemiY ArtsemiY released this 07 Aug 13:19
· 40 commits to main since this release
v0.4.0
14fdf7f

Description

🎉 Here is our new TomoBEAR-0.4.0 release 🎉

🔖 Click to compare code changes with previous version v0.3.0

🚀 New Features

  • crYOLO - module wrapping crYOLO - DL tool, based on You Only Look Once (YOLO) object detection system for predicting particle coordinates (basically picking them) in cryo-electron tomograms

⬆️ Improvements

  • IsoNet: added possibility to post-process IsoNet-corrected tomograms using NAD filtering
  • DynamoTemplateMatching: enabled usage of the tomograms from the custom user-provided path
  • AreTomo:
    • enabled direct usage of AreTomo alignment parameters from previously executed AreTomo step
    • enabled parameters: tilt axis offset (pre-tilt) and temporary reconstruction thickness (VolZ)

🐛 Important fixes

  • DynamoTemplateMatching: ❗ fixed bug preventing GPU-enabled ~10-15x speedup ❗

❗ Important updates

  • changed license of the core code base from AGPLv3 to GPLv3 - changed license to a bit more permissive version in order to allow software maintainers and other TomoBEAR contributors more flexibility in terms of TomoBEAR modifications, needed to provide a TomoBEAR operation over local networks (like institutional intranets and/or shared filesystems);
  • updated documentation:
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