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Issue #3

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Ronykumawat opened this issue Aug 25, 2024 · 0 comments
Open

Issue #3

Ronykumawat opened this issue Aug 25, 2024 · 0 comments

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@Ronykumawat
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Ronykumawat commented Aug 25, 2024

when i run the Prawns i get these error frequently and even in runing test sample

./kmer_pair_grouping.o 2 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'
./kmer_pair_grouping.o 0 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'
./kmer_pair_grouping.o 4 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25./kmer_pair_grouping.o 1 test_result/kmer_pairs_3/ 10 test_result/grouped_pairs/ 3 25 [Errno 2] No such file or directory: './kmer_pair_grouping.o'[Errno 2] No such file or directory: './kmer_pair_grouping.o'

TIME taken to generate grouped kmer pairs per partition: 0.05226325988769531
TIME taken to merge kmer pairs to form blocks: 0.016164302825927734
Traceback (most recent call last):
File "/lustre/ajay.bhatia/rounak/new_pangenome/PRAWNS/run_prawns.py", line 726, in
hash_partitions = np.arange(0, len(hash_strings), part_size)
ZeroDivisionError: float division by zero

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