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Hey, I would greatly appreciate any help I can get with my problem. I am trying to assemble a chloroplast genome and when I run GetOrganelle, there seems to be an issue with disentangling step, but also the graph that I receive is a singular scaffold that is very short. I have tried changing kmer size, w, R and I still get the same problem. Is it a matter of my read quality, and is there a limit to read length that is preventing the assembly of a circular plastome?
The text was updated successfully, but these errors were encountered:
get_org.log.txt
Hey, I would greatly appreciate any help I can get with my problem. I am trying to assemble a chloroplast genome and when I run GetOrganelle, there seems to be an issue with disentangling step, but also the graph that I receive is a singular scaffold that is very short. I have tried changing kmer size, w, R and I still get the same problem. Is it a matter of my read quality, and is there a limit to read length that is preventing the assembly of a circular plastome?
The text was updated successfully, but these errors were encountered: