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  1. open-cravat open-cravat Public

    A modular annotation tool for genomic variants

    JavaScript 118 29

  2. 2020plus 2020plus Public

    Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

    Python 49 17

  3. mhcnuggets mhcnuggets Public

    MHC Class I and Class II neoantigen binding prediction

    Python 28 11

  4. bigmhc bigmhc Public

    BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

    Jupyter Notebook 50 10

  5. pictograph pictograph Public

    A Bayesian hierarchical model to build tumor evolutionary trees

    R 5

  6. open-cravat-dxapp open-cravat-dxapp Public

    open-cravat-dxapp

    Python 1

Repositories

Showing 10 of 42 repositories
  • oc_vignettes Public
    KarchinLab/oc_vignettes’s past year of commit activity
    JavaScript 0 0 0 0 Updated Feb 21, 2025
  • SCHISM Public

    Subclonal Hierarchy Inference from Somatic Mutations

    KarchinLab/SCHISM’s past year of commit activity
    Python 21 9 5 1 Updated Feb 20, 2025
  • KarchinLab/open-cravat-modules-karchinlab’s past year of commit activity
    JavaScript 0 MIT 9 1 3 Updated Feb 20, 2025
  • SVCFit Public
    KarchinLab/SVCFit’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 1, 2025
  • open-cravat Public

    A modular annotation tool for genomic variants

    KarchinLab/open-cravat’s past year of commit activity
    JavaScript 118 MIT 29 30 0 Updated Jan 21, 2025
  • TCRtoolkit-Bulk Public

    A NextFlow pipeline for processing and analyzing TCRseq data

    KarchinLab/TCRtoolkit-Bulk’s past year of commit activity
    Python 0 1 1 0 Updated Dec 19, 2024
  • KarchinLab/open-cravat-readthedocs’s past year of commit activity
    Python 1 4 1 0 Updated Dec 10, 2024
  • KarchinLab/open-cravat-multiuser’s past year of commit activity
    JavaScript 2 2 1 1 Updated Nov 19, 2024
  • KarchinLab/open-cravat-extras’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 12, 2024
  • KarchinLab/open-cravat-roadmap’s past year of commit activity
    0 0 8 0 Updated Oct 29, 2024

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