From 0c0aedb5a299c8ca1928f01c986a8e6eb12f75b6 Mon Sep 17 00:00:00 2001 From: kanduric Date: Tue, 14 Jan 2025 21:01:31 +0100 Subject: [PATCH] bug fixes --- tests/workflows/test_Workflows.py | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/tests/workflows/test_Workflows.py b/tests/workflows/test_Workflows.py index b71a148..920e32d 100644 --- a/tests/workflows/test_Workflows.py +++ b/tests/workflows/test_Workflows.py @@ -148,13 +148,4 @@ def user_config_dict(): 'signal_sequences_file': None, 'positive_label_rate': 0.5, 'public_seq_proportion': 0.1} - return user_config_dict - -def test_debug(user_config_dict): - output_path = "/Users/skanduri/Documents/Projects/airr_ml_bm/27-02-2024" - user_config_dict['output_path'] = os.path.join(output_path, "debug_output") - user_config_dict['signal_pgen_count_mapping_file'] = "/Users/skanduri/Documents/Projects/airr_ml_bm/27-02-2024/signal_seq_pgen_count_map_burden_2_more_freq.tsv" - user_config_dict['signal_sequences_file'] = "/Users/skanduri/Documents/Projects/airr_ml_bm/27-02-2024/HCV_specific_sequences_vdjdb_04082023_processed_deduplicated_genenames_replaced.tsv" - user_config_dict['public_seq_pgen_count_mapping_file'] = "/Users/skanduri/PycharmProjects/simAIRR/simAIRR/config_validator/public_seq_pgen_count_map.tsv" - desired_workflow = Workflows(**user_config_dict) - desired_workflow.execute() \ No newline at end of file + return user_config_dict \ No newline at end of file