t-SNE Result Plot:
Color Legend (Ground Truth)
Green cells are cytoplasm stained only and are correctly grouped by t-SNE.
Red cells are peroxisome stained only and are correctly grouped by t-SNE.
Gray cells are nucleus stained only and are correctly grouped by t-SNE.
Blue cells are whole cell stained and the sample size is too small to see a t-SNE group.
| Directory or file | Description |
|---|---|
| "Visualizing with t-SNE.ipynb" | Main code file! Contains lots of practice and a final section which produces the above t-SNE image |
| "barcode_images/" | 1,571 cropped, rotated, and masked single cell images used in t-SNE. Each cell is barcoded with a different stain localization within the cell |
I'm hoping to clean up the code. Open an issue if you need help.