From dbfa4c056af2b31655df9a7e5b84f721cd91ccd1 Mon Sep 17 00:00:00 2001 From: KOSASIH Date: Sat, 13 Jul 2024 16:35:02 +0700 Subject: [PATCH] Create base_editing.py --- gene_editing_module/base_editing.py | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 gene_editing_module/base_editing.py diff --git a/gene_editing_module/base_editing.py b/gene_editing_module/base_editing.py new file mode 100644 index 0000000..2e32fcd --- /dev/null +++ b/gene_editing_module/base_editing.py @@ -0,0 +1,18 @@ +import numpy as np + +class BaseEditor: + def __init__(self, gene_sequence): + self.gene_sequence = gene_sequence + + def edit_base(self, target_base, new_base): + # Implement base editing algorithm + edited_sequence = np.array(list(self.gene_sequence)) + edited_sequence[target_base] = new_base + return ''.join(edited_sequence) + + def edit_multiple_bases(self, target_bases, new_bases): + # Implement multiple base editing algorithm + edited_sequence = self.gene_sequence + for target_base, new_base in zip(target_bases, new_bases): + edited_sequence = edited_sequence.replace(target_base, new_base) + return edited_sequence