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import pandas as pd | ||
from skbio import DNA | ||
from Bio import SeqIO | ||
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class GenomicsAnalysis: | ||
def __init__(self, genome_file): | ||
self.genome = SeqIO.read(genome_file, 'fasta') | ||
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def analyze_genome(self): | ||
# Perform genomics analysis using scikit-bio and Biopython | ||
dna = DNA(self.genome.seq) | ||
gc_content = dna.gc_content() | ||
print(f'GC content: {gc_content:.2f}%') | ||
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# Identify genes and their functions | ||
genes = [] | ||
for feature in self.genome.features: | ||
if feature.type == 'gene': | ||
genes.append(feature) | ||
print(f'Found {len(genes)} genes') |