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Create genomics_analysis.py
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KOSASIH authored Jul 13, 2024
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20 changes: 20 additions & 0 deletions ai_engine/genomics_analysis.py
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import pandas as pd
from skbio import DNA
from Bio import SeqIO

class GenomicsAnalysis:
def __init__(self, genome_file):
self.genome = SeqIO.read(genome_file, 'fasta')

def analyze_genome(self):
# Perform genomics analysis using scikit-bio and Biopython
dna = DNA(self.genome.seq)
gc_content = dna.gc_content()
print(f'GC content: {gc_content:.2f}%')

# Identify genes and their functions
genes = []
for feature in self.genome.features:
if feature.type == 'gene':
genes.append(feature)
print(f'Found {len(genes)} genes')

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