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@KMA-Aarhus

KMA Aarhus

Klinisk Mikrobiologisk Afdeling ved Aarhus Universitetshospital

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  1. pappenheim pappenheim Public

    ⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling

    R 2

  2. CoverMon CoverMon Public

    A script that does live read mapping of nanopore sequencing

    Python 1

  3. spike-sanger spike-sanger Public archive

    Sanger sequencing of a region in the SARS-CoV-2 spike gene.

    R

  4. pipe19 pipe19 Public

    Forked from cmkobel/pipe19

    This is the pipeline that handles SARS-CoV-2 samples from Region Midtjylland

    R

  5. kmapipeline2 kmapipeline2 Public archive

    Forked from cmkobel/kmapipeline2

    🦠🏗️ This is an as-automated-as-possible pipeline for clinically relevant microbial isolates. (Illumina PE)

    Python

  6. assemblycomparator2 assemblycomparator2 Public

    Forked from cmkobel/CompareM2

    🦠📇 compare microbial assemblies

    Python

Repositories

Showing 10 of 11 repositories
  • HelperScripts Public

    Collection of small helper scripts

    KMA-Aarhus/HelperScripts’s past year of commit activity
    Python 0 0 0 0 Updated Apr 22, 2024
  • pcr-primer-tool Public Forked from rimyjen/pcr-primer-tool
    KMA-Aarhus/pcr-primer-tool’s past year of commit activity
    Python 0 1 0 0 Updated Feb 5, 2024
  • AssembleQCIllumina Public
    KMA-Aarhus/AssembleQCIllumina’s past year of commit activity
    R 0 0 0 0 Updated Apr 14, 2023
  • pappenheim Public

    ⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling

    KMA-Aarhus/pappenheim’s past year of commit activity
    R 2 0 1 0 Updated Feb 21, 2023
  • viraligner Public
    KMA-Aarhus/viraligner’s past year of commit activity
    R 0 0 0 0 Updated Jan 11, 2023
  • CoverMon Public

    A script that does live read mapping of nanopore sequencing

    KMA-Aarhus/CoverMon’s past year of commit activity
    Python 1 0 0 0 Updated Nov 10, 2022
  • assemblycomparator2 Public Forked from cmkobel/CompareM2

    🦠📇 compare microbial assemblies

    KMA-Aarhus/assemblycomparator2’s past year of commit activity
    Python 0 3 0 0 Updated Oct 28, 2022
  • AssembleQCHybrid Public
    KMA-Aarhus/AssembleQCHybrid’s past year of commit activity
    0 0 0 0 Updated Apr 27, 2022
  • pipe19 Public Forked from cmkobel/pipe19

    This is the pipeline that handles SARS-CoV-2 samples from Region Midtjylland

    KMA-Aarhus/pipe19’s past year of commit activity
    R 0 1 0 0 Updated Mar 16, 2021
  • spike-sanger Public archive

    Sanger sequencing of a region in the SARS-CoV-2 spike gene.

    KMA-Aarhus/spike-sanger’s past year of commit activity
    R 0 0 1 0 Updated Mar 5, 2021
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