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BeerMol is a small Python script to display a molecule in real time during quantum chemical calculation.

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BeerMol

Displays molecular geometry from an .xyz file or a .log file of Gaussian, Orca or Priroda in real time in HyperChem style. It can be useful for geometry optimization jobs. GAMESS / Firefly support coming soon.

Can be run alongside with a calculation using a simple script, for example:

#!/bin/sh
export GIN="$@"
export GOUT="${GIN%.*}.log"
touch $GOUT
exec python3 ~/beermol/main.py $GOUT &
exec g09 "$@"

BeerMol requires VTK, SciPy and PyQT. To install, type in terminal:

pip install -r requirements.txt

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BeerMol is a small Python script to display a molecule in real time during quantum chemical calculation.

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