fix links, remove unecessary comments

.github/workflows/Documentation.yml

@@ -17,9 +17,8 @@ jobs:
       - name: Installing non-registered dependencies
         run: |
           using Pkg
-          pkg1 = PackageSpec(url = "https://github.com/JuliaSmoothOptimizers/PartiallySeparableNLPModels.jl.git")
-          pkg2 = PackageSpec(url = "https://github.com/paraynaud/PartiallySeparableSolvers.jl.git")          
-          pkg_list = [pkg1, pkg2]
+          pkg = PackageSpec(url = "https://github.com/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl.git")          
+          pkg_list = [pkg]
           Pkg.add(pkg_list)
         shell: julia --project=docs --color=yes {0}          
       - name: Install dependencies
@@ -29,7 +28,3 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
         run: julia --project=docs --color=yes docs/make.jl
-
-
-# using DocumenterTools
-# DocumenterTools.genkeys(user="paraynaud", repo="PartiallySeparableSolvers.jl")

.github/workflows/ci.yml

@@ -46,13 +46,6 @@ jobs:
             ${{ runner.os }}-test-${{ env.cache-name }}-
             ${{ runner.os }}-test-
             ${{ runner.os }}-
-      - name: Installing non-registered dependencies
-        run: |
-          using Pkg
-          pkg = PackageSpec(url = "https://github.com/JuliaSmoothOptimizers/PartiallySeparableNLPModels.jl.git")
-          pkg_list = [pkg]
-          Pkg.add(pkg_list)
-        shell: julia --project="@." --color=yes {0}
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1

.zenodo.json

@@ -13,7 +13,7 @@
   "related_identifiers": [
     {
       "scheme": "url",
-      "identifier": "https://github.com/paraynaud/PartiallySeparableSolvers.jl/releases/latest",
+      "identifier": "https://github.com/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl/releases/latest",
       "relation": "isSupplementTo"
     }
   ]

CITATION.bib

@@ -2,7 +2,7 @@ @Misc{raynaud2022
   author = {P. Raynaud },
   title = {{PartiallySeparableSolvers.jl}:},
   month = {Month},
-  howpublished = {\url{https://github.com/paraynaud/PartiallySeparableSolvers.jl}},
+  howpublished = {\url{https://github.com/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl}},
   year = {2022},
   DOI = {}
 }

README.md

@@ -5,15 +5,15 @@
 | [![docs-stable][docs-stable-img]][docs-stable-url] [![docs-dev][docs-dev-img]][docs-dev-url] | [![build-gh][build-gh-img]][build-gh-url] [![build-cirrus][build-cirrus-img]][build-cirrus-url] | [![codecov][codecov-img]][codecov-url] | [![doi][doi-img]][doi-url] |
 
 [docs-stable-img]: https://img.shields.io/badge/docs-stable-blue.svg
-[docs-stable-url]: https://paraynaud.github.io/PartiallySeparableSolvers.jl/stable
+[docs-stable-url]: https://JuliaSmoothOptimizers.github.io/PartiallySeparableSolvers.jl/stable
 [docs-dev-img]: https://img.shields.io/badge/docs-dev-purple.svg
-[docs-dev-url]: https://paraynaud.github.io/PartiallySeparableSolvers.jl/dev
-[build-gh-img]: https://github.com/paraynaud/PartiallySeparableSolvers.jl/workflows/CI/badge.svg?branch=master
-[build-gh-url]: https://github.com/paraynaud/PartiallySeparableSolvers.jl/actions
-[build-cirrus-img]: https://img.shields.io/cirrus/github/paraynaud/PartiallySeparableSolvers.jl?logo=Cirrus%20CI
-[build-cirrus-url]: https://cirrus-ci.com/github/paraynaud/PartiallySeparableSolvers.jl
-[codecov-img]: https://codecov.io/gh/paraynaud/PartiallySeparableSolvers.jl/branch/master/graph/badge.svg
-[codecov-url]: https://app.codecov.io/gh/paraynaud/PartiallySeparableSolvers.jl
+[docs-dev-url]: https://JuliaSmoothOptimizers.github.io/PartiallySeparableSolvers.jl/dev
+[build-gh-img]: https://github.com/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl/workflows/CI/badge.svg?branch=master
+[build-gh-url]: https://github.com/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl/actions
+[build-cirrus-img]: https://img.shields.io/cirrus/github/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl?logo=Cirrus%20CI
+[build-cirrus-url]: https://cirrus-ci.com/github/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl
+[codecov-img]: https://codecov.io/gh/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl/branch/master/graph/badge.svg
+[codecov-url]: https://app.codecov.io/gh/JuliaSmoothOptimizers/PartiallySeparableSolvers.jl
 [doi-img]: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.822073-blue.svg
 [doi-url]: https://doi.org/10.5281/zenodo.822073
 
@@ -31,7 +31,7 @@ pkg> test PartiallySeparableSolvers
 ```
 
 ## How to use 
-See the [tutorial](https://paraynaud.github.io/PartiallySeparableSolvers.jl/dev/tutorial/).
+See the [tutorial](https://JuliaSmoothOptimizers.github.io/PartiallySeparableSolvers.jl/dev/tutorial/).
 
 ## Dependencies
 The module uses [PartiallySeparableNLPModels.jl](https://github.com/JuliaSmoothOptimizers/PartiallySeparableNLPModels.jl) to detect the partially-separable structure and the structure required for partitioned quasi-Newton approximations.

src/tr_cg_part_data.jl

@@ -101,7 +101,6 @@ function partitionedTrunk(
   while absolute(n, gₖ, ϵ) &&
           relative(n, gₖ, ϵ, ∇fNorm2) &&
           _max_iter(iter, max_iter) & _max_time(start_time) # stop condition
-    # verbose && (@printf "%3d %5.1f   %6.1e %7.1e %6.1e \t " iter (time() - start_time) fₖ norm(gₖ, 2) Δ)
 
     iter += 1
     cg_res = Krylov.cg(B, -gₖ, atol = T(atol), rtol = cgtol, radius = T(Δ), itmax = max(2 * n, 50))
@@ -140,16 +139,12 @@ function partitionedTrunk(
 
   if !absolute(n, g, ϵ) || !relative(n, g, ϵ, ∇f₀Norm2)
     status = :first_order
-    # println("stationnary point ✅")
   elseif !_max_iter(iter, max_iter)
     status = :max_eval
-    # println("Max eval ❌")
   elseif !_max_time(start_time)
     status = :max_time
-    # println("Max time ❌")
   else
     status = :unknown
-    # println("Unknown ❌")
   end
 
   nlp.counters.neval_obj = cpt.neval_obj