Run index example automatically #68
CI.yml
on: pull_request
Documentation
11m 18s
Matrix: test
Annotations
2 errors and 2 warnings
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/index.md:17-42
```@example
using AtomsBase
using EmpiricalPotentials
using GeometryOptimization
using LinearAlgebra
using Unitful
using UnitfulAtomic
# Setup system and calculator
cell_vectors = ([10.0, 0.0, 0.0]u"Å", [0.0, 10.0, 0.0]u"Å", [0.0, 0.0, 10.0]u"Å")
system = periodic_system([:H => [0, 0, 0.0]u"bohr",
:H => [0, 0, 1.9]u"bohr"],
cell_vectors)
zH = 1
emins = Dict((zH, zH) => -1.17u"hartree", )
rmins = Dict((zH, zH) => 0.743u"Å", )
calc = LennardJones(emins, rmins, 5.0u"Å")
# Run the geometry optimisation (using verbosity=1 to print the progress)
results = minimize_energy!(system, calc; verbosity=1)
# Inspect the results
optimised_system = results.system
optimised_bondlength = norm(position(optsystem[1]) - position(optsystem[2]))
nothing # hide
```
exception =
UndefVarError: `optsystem` not defined in `Main.__atexample__233`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ index.md:40
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
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Documentation
Process completed with exit code 1.
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Julia 1.10 - ubuntu-latest - x64 - pull_request
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Julia nightly - ubuntu-latest - x64 - pull_request
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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