update docs

Project.toml

@@ -1,6 +1,6 @@
 name = "Meshing"
 uuid = "e6723b4c-ebff-59f1-b4b7-d97aa5274f73"
-version = "0.7.0"
+version = "0.6.0"
 
 [deps]
 

docs/Manifest.toml

@@ -1,56 +1,195 @@
 # This file is machine-generated - editing it directly is not advised
 
+[[ANSIColoredPrinters]]
+git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
+uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9"
+version = "0.0.1"
+
+[[AbstractTrees]]
+git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177"
+uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
+version = "0.4.5"
+
+[[ArgTools]]
+uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+version = "1.1.1"
+
+[[Artifacts]]
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
+[[CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.5"
+
 [[Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
-git-tree-sha1 = "a32185f5428d3986f47c2ab78b1f216d5e6cc96f"
+git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.8.5"
+version = "0.9.3"
 
 [[Documenter]]
-deps = ["Base64", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
-git-tree-sha1 = "d45c163c7a3ae293c15361acc52882c0f853f97c"
+deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
+git-tree-sha1 = "76deb8c15f37a3853f13ea2226b8f2577652de05"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "0.23.4"
+version = "1.5.0"
+
+[[Downloads]]
+deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
+uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
+version = "1.6.0"
+
+[[Expat_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7"
+uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
+version = "2.6.2+0"
+
+[[FileWatching]]
+uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
+
+[[Git]]
+deps = ["Git_jll"]
+git-tree-sha1 = "04eff47b1354d702c3a85e8ab23d539bb7d5957e"
+uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
+version = "1.3.1"
+
+[[Git_jll]]
+deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]
+git-tree-sha1 = "d18fb8a1f3609361ebda9bf029b60fd0f120c809"
+uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
+version = "2.44.0+2"
+
+[[IOCapture]]
+deps = ["Logging", "Random"]
+git-tree-sha1 = "b6d6bfdd7ce25b0f9b2f6b3dd56b2673a66c8770"
+uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
+version = "0.2.5"
 
 [[InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
+[[JLLWrappers]]
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
+uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
+version = "1.5.0"
+
 [[JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
-git-tree-sha1 = "8076680b162ada2a031f707ac7b4953e30667a37"
+git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-version = "0.21.2"
+version = "0.21.4"
+
+[[LazilyInitializedFields]]
+git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612"
+uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
+version = "1.2.2"
+
+[[LibCURL]]
+deps = ["LibCURL_jll", "MozillaCACerts_jll"]
+uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
+version = "0.6.4"
+
+[[LibCURL_jll]]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
+uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
+version = "8.4.0+0"
 
 [[LibGit2]]
-deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
+deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
+[[LibGit2_jll]]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
+uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
+version = "1.6.4+0"
+
+[[LibSSH2_jll]]
+deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
+uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
+version = "1.11.0+1"
+
+[[Libdl]]
+uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+
+[[Libiconv_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
+uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
+version = "1.17.0+0"
+
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
+[[MarkdownAST]]
+deps = ["AbstractTrees", "Markdown"]
+git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899"
+uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391"
+version = "0.1.2"
+
+[[MbedTLS_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
+version = "2.28.2+1"
+
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
+[[MozillaCACerts_jll]]
+uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
+version = "2023.1.10"
+
 [[NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
+version = "1.2.0"
+
+[[OpenSSL_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5"
+uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
+version = "3.0.14+0"
+
+[[PCRE2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
+version = "10.42.0+1"
 
 [[Parsers]]
-deps = ["Dates"]
-git-tree-sha1 = "438d35d2d95ae2c5e8780b330592b6de8494e779"
+deps = ["Dates", "PrecompileTools", "UUIDs"]
+git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.0.3"
+version = "2.8.1"
+
+[[Pkg]]
+deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
+uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+version = "1.10.0"
+
+[[PrecompileTools]]
+deps = ["Preferences"]
+git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
+uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
+version = "1.2.1"
+
+[[Preferences]]
+deps = ["TOML"]
+git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
+uuid = "21216c6a-2e73-6563-6e65-726566657250"
+version = "1.4.3"
 
 [[Printf]]
 deps = ["Unicode"]
@@ -61,21 +200,66 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[Random]]
-deps = ["Serialization"]
+deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
+[[RegistryInstances]]
+deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
+git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51"
+uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3"
+version = "0.1.0"
+
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
+version = "0.7.0"
 
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
 [[Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
+[[TOML]]
+deps = ["Dates"]
+uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
+version = "1.0.3"
+
+[[Tar]]
+deps = ["ArgTools", "SHA"]
+uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
+version = "1.10.0"
+
 [[Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
+[[TranscodingStreams]]
+git-tree-sha1 = "60df3f8126263c0d6b357b9a1017bb94f53e3582"
+uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+version = "0.11.0"
+weakdeps = ["Random", "Test"]
+
+    [TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
+
+[[UUIDs]]
+deps = ["Random", "SHA"]
+uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
+
 [[Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
+
+[[Zlib_jll]]
+deps = ["Libdl"]
+uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
+version = "1.2.13+1"
+
+[[nghttp2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+version = "1.52.0+1"
+
+[[p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
+version = "17.4.0+2"

docs/Project.toml

@@ -2,4 +2,4 @@
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 
 [compat]
-Documenter = "~0.23"
+Documenter = "1"

docs/make.jl

@@ -4,7 +4,7 @@ using Meshing
 makedocs(
     sitename = "Meshing",
     format = Documenter.HTML(),
-    modules = [Meshing],
+   #modules = [Meshing],
     pages = ["Index" => "index.md",
              "API" => "api.md",
              "Examples" => "examples.md"]

docs/src/examples.md

@@ -32,33 +32,7 @@ WGLMakie.mesh(vts, map(v -> GeometryBasics.TriangleFace(v...), fcs))
 
 ![cta cardio](./img/ctacardio.png)
 
-## Functions
-
-```julia
-using Meshing
-using FileIO # MeshIO should also be installed
-using GeometryBasics
-
-gyroid(v) = cos(v[1])*sin(v[2])+cos(v[2])*sin(v[3])+cos(v[3])*sin(v[1])
-gyroid_shell(v) = max(gyroid(v)-0.4,-gyroid(v)-0.4)
-
-# generate directly using GeometryBasics API
-# Rect specifies the sampling intervals
-gy_mesh = Mesh(gyroid_shell, Rect(Vec(0,0,0),Vec(pi*4,pi*4,pi*4)),
-                       MarchingCubes(), samples=(50,50,50))
-
-save("gyroid.ply", gy_mesh)
-
-# view with Makie
-import Makie
-using LinearAlgebra
-Makie.mesh(gy_mesh, color=[norm(v) for v in coordinates(gy_mesh)])
-```
-
-![gyroid](./img/gyroid.png)
-
-
-## Isocaps
+## Gyroid and Isocaps
 
 We do not provide an equivalent to `isocaps` in Matlab, though
 a similar result may be achieved by setting the boundary to a large value:
@@ -79,10 +53,10 @@ A[end,:,:] .= 1e10
 A[:,end,:] .= 1e10
 A[:,:,end] .= 1e10
 
-gy_mesh = GLNormalMesh(A, MarchingCubes())
+vts, fcs = isosurface(A, MarchingCubes())
 
 # view with Makie
-import Makie
+import WGLMakie
 using LinearAlgebra
-Makie.mesh(gy_mesh, color=[norm(v) for v in gy_mesh.vertices])
+WGLMakie.mesh(vts, map(v -> GeometryBasics.TriangleFace(v...), fcs), color=[norm(v) for v in v])
 ```