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skeleton example with fillarrays #344

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Oct 18, 2023
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skeleton example with fillarrays #344

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119f626
skeleton example with fillarrays
Qfl3x Oct 18, 2023
ca12f0c
Updated docs Project.toml, Manifest.toml FillArrays
Qfl3x Oct 18, 2023
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12 changes: 6 additions & 6 deletions docs/Manifest.toml
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# This file is machine-generated - editing it directly is not advised

julia_version = "1.9.3"
julia_version = "1.9.0"
manifest_format = "2.0"
project_hash = "e18cc0fe4d9afd9d2eb46389f66fe2261ad168ab"
project_hash = "774cd2545609e2b3f1430cf0b0273c5619a0c0dc"

[[deps.ANSIColoredPrinters]]
git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
Expand Down Expand Up @@ -265,7 +265,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.0.5+0"
version = "1.0.2+0"

[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
Expand Down Expand Up @@ -1454,7 +1454,7 @@ version = "0.42.2+0"
[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.9.2"
version = "1.9.0"

[[deps.PkgVersion]]
deps = ["Pkg"]
Expand Down Expand Up @@ -2086,7 +2086,7 @@ version = "0.6.1"
deps = ["CFTime", "DataStructures", "Dates", "DimensionalData", "DiskArrayTools", "DiskArrays", "Distributed", "DocStringExtensions", "Glob", "Interpolations", "IntervalSets", "IterTools", "Markdown", "OffsetArrays", "OnlineStats", "Optim", "OrderedCollections", "ParallelUtilities", "ProgressMeter", "Reexport", "Requires", "Statistics", "StatsBase", "Tables", "WeightedOnlineStats", "YAXArrayBase"]
path = ".."
uuid = "c21b50f5-aa40-41ea-b809-c0f5e47bfa5c"
version = "0.5.1"
version = "0.5.2"

[[deps.Zarr]]
deps = ["AWSS3", "Blosc", "CodecZlib", "DataStructures", "Dates", "DiskArrays", "HTTP", "JSON", "LRUCache", "OffsetArrays", "OpenSSL", "Pkg", "URIs"]
Expand Down Expand Up @@ -2132,7 +2132,7 @@ version = "0.15.1+0"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+0"
version = "5.7.0+0"

[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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1 change: 1 addition & 0 deletions docs/Project.toml
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Expand Up @@ -8,6 +8,7 @@ Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
DocumenterMarkdown = "997ab1e6-3595-5248-9280-8efb232c3433"
Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
EarthDataLab = "359177bc-a543-11e8-11b7-bb015dba3358"
FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
GeoInterface = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
GeoJSON = "61d90e0f-e114-555e-ac52-39dfb47a3ef9"
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11 changes: 7 additions & 4 deletions docs/examples/UserGuide/saving.jl
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Expand Up @@ -42,13 +42,16 @@ open_dataset(f, driver=:zarr)

# ## Datacube Skeleton without the actual data
# Sometimes one merely wants to create a datacube "Skeleton" on disk and gradually fill it with data.
# Here we create YAXArray and write only the axis data and array metadata to disk,
# Here we make use of FillArrays to create a YAXArray and write only the axis data and array metadata to disk,
# while no actual array data is copied:

using YAXArrays, Zarr
a = YAXArray(zeros(Union{Missing, Int32},10,20))
using YAXArrays, Zarr, FillArrays
a = YAXArray(Zeros(Union{Missing, Int32},10,20))
f = tempname();
r = savecube(a,f,driver=:zarr,skeleton=true);
all(ismissing,r[:,:])

# The `skeleton` argument is also available for `savedataset`.
# If using FillArrays is not possible, using the `zeros` function works as well, though it does allocate the array
# in memory.

# The `skeleton` argument is also available for `savedataset`.
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