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Documenter.jl committed Sep 26, 2023
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96 changes: 48 additions & 48 deletions dev/api/index.html
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Expand Up @@ -1010,7 +1010,7 @@ <h2 id="how-do-i-use-the-cubetable-function">How do I use the CubeTable function
<span class="n">cbar</span><span class="o">.</span><span class="n">ticks</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="n">ticks_position</span><span class="p">,</span><span class="w"> </span><span class="n">string</span><span class="o">.</span><span class="p">(</span><span class="n">mn</span><span class="o">:</span><span class="n">mx</span><span class="p">))</span>
<span class="n">fig</span>
</code></pre></div>
<p><img alt="" src="../yhefklq.png"></p>
<p><img alt="" src="../rnbkxai.png"></p>
<p>Now we define the input cubes that will be considered for the iterable table</p>
<div class="highlight"><pre><span></span><code><span class="n">t</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">CubeTable</span><span class="p">(</span><span class="n">values</span><span class="o">=</span><span class="n">ds1</span><span class="p">,</span><span class="w"> </span><span class="n">classes</span><span class="o">=</span><span class="n">classes</span><span class="p">)</span>

Expand All @@ -1021,7 +1021,7 @@ <h2 id="how-do-i-use-the-cubetable-function">How do I use the CubeTable function
<span class="n">first</span><span class="p">(</span><span class="n">c_tbl</span><span class="p">,</span><span class="w"> </span><span class="mi">5</span><span class="p">)</span>
</code></pre></div>
<div><div style="float: left;"><span>5×5 DataFrame</span></div><div style="clear: both;"></div></div>
<div class="data-frame" style="overflow-x: scroll;"><table class="data-frame" style="margin-bottom: 6px;"><thead><tr class="header"><th class="rowNumber" style="font-weight: bold; text-align: right;">Row</th><th style="text-align: left;">values</th><th style="text-align: left;">classes</th><th style="text-align: left;">time</th><th style="text-align: left;">lon</th><th style="text-align: left;">lat</th></tr><tr class="subheader headerLastRow"><th class="rowNumber" style="font-weight: bold; text-align: right;"></th><th title="Float64" style="text-align: left;">Float64</th><th title="Int64" style="text-align: left;">Int64</th><th title="Float64" style="text-align: left;">Float64</th><th title="Float64" style="text-align: left;">Float64</th><th title="Float64" style="text-align: left;">Float64</th></tr></thead><tbody><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">1</td><td style="text-align: right;">0.451093</td><td style="text-align: right;">2</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">2</td><td style="text-align: right;">0.789874</td><td style="text-align: right;">2</td><td style="text-align: right;">2.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">3</td><td style="text-align: right;">0.157888</td><td style="text-align: right;">2</td><td style="text-align: right;">3.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">4</td><td style="text-align: right;">0.515643</td><td style="text-align: right;">2</td><td style="text-align: right;">4.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">5</td><td style="text-align: right;">0.384289</td><td style="text-align: right;">2</td><td style="text-align: right;">5.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr></tbody></table></div>
<div class="data-frame" style="overflow-x: scroll;"><table class="data-frame" style="margin-bottom: 6px;"><thead><tr class="header"><th class="rowNumber" style="font-weight: bold; text-align: right;">Row</th><th style="text-align: left;">values</th><th style="text-align: left;">classes</th><th style="text-align: left;">time</th><th style="text-align: left;">lon</th><th style="text-align: left;">lat</th></tr><tr class="subheader headerLastRow"><th class="rowNumber" style="font-weight: bold; text-align: right;"></th><th title="Float64" style="text-align: left;">Float64</th><th title="Int64" style="text-align: left;">Int64</th><th title="Float64" style="text-align: left;">Float64</th><th title="Float64" style="text-align: left;">Float64</th><th title="Float64" style="text-align: left;">Float64</th></tr></thead><tbody><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">1</td><td style="text-align: right;">0.946116</td><td style="text-align: right;">3</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">2</td><td style="text-align: right;">0.353819</td><td style="text-align: right;">3</td><td style="text-align: right;">2.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">3</td><td style="text-align: right;">0.728055</td><td style="text-align: right;">3</td><td style="text-align: right;">3.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">4</td><td style="text-align: right;">0.132575</td><td style="text-align: right;">3</td><td style="text-align: right;">4.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr><tr><td class="rowNumber" style="font-weight: bold; text-align: right;">5</td><td style="text-align: right;">0.774654</td><td style="text-align: right;">3</td><td style="text-align: right;">5.0</td><td style="text-align: right;">1.0</td><td style="text-align: right;">1.0</td></tr></tbody></table></div>

<p>In this line we calculate the <code>Mean</code> for each class</p>
<div class="highlight"><pre><span></span><code><span class="n">fitcube</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">cubefittable</span><span class="p">(</span><span class="n">t</span><span class="p">,</span><span class="w"> </span><span class="n">Mean</span><span class="p">,</span><span class="w"> </span><span class="ss">:values</span><span class="p">,</span><span class="w"> </span><span class="n">by</span><span class="o">=</span><span class="p">(</span><span class="ss">:classes</span><span class="p">))</span>
Expand Down Expand Up @@ -1055,12 +1055,12 @@ <h3 id="dimarray-to-yaxarray"><code>DimArray</code> to <code>YAXArray</code><a c
<div class="highlight"><pre><span></span><code>5×6 DimArray{Float64,2} with dimensions:
X Sampled{Int64} 1:5 ForwardOrdered Regular Points,
Y Sampled{Float64} 10.0:1.0:15.0 ForwardOrdered Regular Points
10.0 11.0 12.0 13.0 14.0 15.0
1 0.180336 0.451871 0.96912 0.0948705 0.829518 0.348451
2 0.35136 0.789972 0.462449 0.815684 0.143282 0.652609
3 0.668407 0.274558 0.543101 0.481748 0.595734 0.477061
4 0.93358 0.127381 0.935306 0.409166 0.91985 0.695221
5 0.705375 0.594982 0.890997 0.1922 0.136168 0.41885
10.0 11.0 12.0 13.0 14.0 15.0
1 0.541425 0.465181 0.528085 0.582693 0.385701 0.705725
2 0.56189 0.278783 0.248127 0.735907 0.60122 0.486645
3 0.591008 0.687154 0.727052 0.618973 0.689554 0.0484672
4 0.0942573 0.0983535 0.971149 0.129895 0.157091 0.68817
5 0.622607 0.598763 0.188608 0.308201 0.373404 0.551911
</code></pre></div>
<div class="admonition warning">
<p class="admonition-title">metadata</p>
Expand Down Expand Up @@ -1099,12 +1099,12 @@ <h3 id="yaxarray-into-a-dimarray"><code>YAXArray</code> into a <code>DimArray</c
<div class="highlight"><pre><span></span><code>5×6 DimArray{Float64,2} with dimensions:
Dim{:X} Sampled{Int64} 1:5 ForwardOrdered Regular Points,
Dim{:Y} Sampled{Float64} 10.0:1.0:15.0 ForwardOrdered Regular Points
10.0 11.0 12.0 13.0 14.0 15.0
1 0.180336 0.451871 0.96912 0.0948705 0.829518 0.348451
2 0.35136 0.789972 0.462449 0.815684 0.143282 0.652609
3 0.668407 0.274558 0.543101 0.481748 0.595734 0.477061
4 0.93358 0.127381 0.935306 0.409166 0.91985 0.695221
5 0.705375 0.594982 0.890997 0.1922 0.136168 0.41885
10.0 11.0 12.0 13.0 14.0 15.0
1 0.541425 0.465181 0.528085 0.582693 0.385701 0.705725
2 0.56189 0.278783 0.248127 0.735907 0.60122 0.486645
3 0.591008 0.687154 0.727052 0.618973 0.689554 0.0484672
4 0.0942573 0.0983535 0.971149 0.129895 0.157091 0.68817
5 0.622607 0.598763 0.188608 0.308201 0.373404 0.551911
</code></pre></div>
<p>at the moment there is no support to save a DimArray directly into disk as a <code>NetCDF</code> or a <code>Zarr</code> file.</p>
<div class="admonition question">
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Expand Up @@ -847,7 +847,7 @@ <h2 id="compute-the-mean-seasonal-cycle-for-one-sigle-pixel">Compute the Mean Se
<span class="w"> </span><span class="n">figure</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(;</span><span class="w"> </span><span class="n">resolution</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="mi">600</span><span class="p">,</span><span class="mi">400</span><span class="p">))</span>
<span class="w"> </span><span class="p">)</span>
</code></pre></div>
<p><img alt="" src="../hvzqupl.png"></p>
<p><img alt="" src="../hzgrend.png"></p>
<p>Currently makie doesn't support time axis natively, but the following function can do the work for now.</p>
<div class="highlight"><pre><span></span><code><span class="k">function</span><span class="w"> </span><span class="n">time_ticks</span><span class="p">(</span><span class="n">dates</span><span class="p">;</span><span class="w"> </span><span class="n">frac</span><span class="o">=</span><span class="mi">8</span><span class="p">)</span>
<span class="w"> </span><span class="n">tempo</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">string</span><span class="o">.</span><span class="p">(</span><span class="n">dates</span><span class="p">)</span>
Expand All @@ -870,7 +870,7 @@ <h2 id="compute-the-mean-seasonal-cycle-for-one-sigle-pixel">Compute the Mean Se
<span class="n">ax</span><span class="o">.</span><span class="n">xticklabelalign</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="ss">:right</span><span class="p">,</span><span class="w"> </span><span class="ss">:center</span><span class="p">)</span>
<span class="n">fig</span>
</code></pre></div>
<p><img alt="" src="../payspqy.png"></p>
<p><img alt="" src="../lkutfsn.png"></p>
<p><a id="Define-the-cube"></a></p>
<p><a id="Define-the-cube-1"></a></p>
<h2 id="define-the-cube">Define the cube<a class="headerlink" href="#define-the-cube" title="Permanent link">¤</a></h2>
Expand Down Expand Up @@ -922,7 +922,7 @@ <h2 id="plot-results-mean-seasonal-cycle">Plot results: mean seasonal cycle<a cl
<span class="n">fig</span>
<span class="n">current_figure</span><span class="p">()</span>
</code></pre></div>
<p><img alt="" src="../kbyjmzo.png"></p>
<p><img alt="" src="../stpymyf.png"></p>
<hr>
<p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></div>

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Expand Up @@ -1038,11 +1038,11 @@ <h3 id="the-rest-is-plotting-in-this-example-we-use-geomakie">The rest is plotti

<span class="n">fig1</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">geoplotsfx</span><span class="p">(</span><span class="n">q10_direct</span><span class="p">[</span><span class="o">:</span><span class="p">,</span><span class="o">:</span><span class="p">]</span><span class="o">.</span><span class="n">data</span><span class="p">,</span><span class="w"> </span><span class="s">"a) Confounded Parameter Estimation"</span><span class="p">,</span><span class="w"> </span><span class="n">label_direct</span><span class="p">,</span><span class="w"> </span><span class="n">crange</span><span class="p">,</span><span class="w"> </span><span class="n">cmap</span><span class="p">)</span>
</code></pre></div>
<p><img alt="" src="../jpxqtar.png"></p>
<p><img alt="" src="../xzsuaqn.png"></p>
<p>and for the other case</p>
<div class="highlight"><pre><span></span><code><span class="n">fig2</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">geoplotsfx</span><span class="p">(</span><span class="n">q10_scape</span><span class="p">[</span><span class="o">:</span><span class="p">,</span><span class="o">:</span><span class="p">]</span><span class="o">.</span><span class="n">data</span><span class="p">,</span><span class="w"> </span><span class="s">"b) Scale Dependent Parameter Estimation"</span><span class="p">,</span><span class="w"> </span><span class="n">label_scape</span><span class="p">,</span><span class="w"> </span><span class="n">crange</span><span class="p">,</span><span class="w"> </span><span class="n">cmap</span><span class="p">)</span>
</code></pre></div>
<p><img alt="" src="../tpmkwnv.png"></p>
<p><img alt="" src="../ylxuqle.png"></p>
<p><a id="The-following-are-some-additional-analyses,-not-included-in-the-paper."></a></p>
<p><a id="The-following-are-some-additional-analyses,-not-included-in-the-paper.-1"></a></p>
<h2 id="the-following-are-some-additional-analyses-not-included-in-the-paper">The following are some additional analyses, not included in the paper.<a class="headerlink" href="#the-following-are-some-additional-analyses-not-included-in-the-paper" title="Permanent link">¤</a></h2>
Expand Down Expand Up @@ -1140,11 +1140,11 @@ <h2 id="the-following-are-some-additional-analyses-not-included-in-the-paper">Th

<span class="n">fig3</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">geoplotsfx</span><span class="p">(</span><span class="n">cor_tair_rb</span><span class="p">[</span><span class="o">:</span><span class="p">,</span><span class="o">:</span><span class="p">]</span><span class="o">.</span><span class="n">data</span><span class="p">,</span><span class="w"> </span><span class="s">"Correlation Tair and Rb"</span><span class="p">,</span><span class="w"> </span><span class="s">"Coefficient"</span><span class="p">,</span><span class="w"> </span><span class="n">crange</span><span class="p">,</span><span class="w"> </span><span class="n">cmap</span><span class="p">)</span>
</code></pre></div>
<p><img alt="" src="../amohjvl.png"></p>
<p><img alt="" src="../ysvckms.png"></p>
<p>and also</p>
<div class="highlight"><pre><span></span><code><span class="n">fig4</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">geoplotsfx</span><span class="p">(</span><span class="n">q10_diff</span><span class="p">[</span><span class="o">:</span><span class="p">,</span><span class="o">:</span><span class="p">]</span><span class="o">.</span><span class="n">data</span><span class="p">,</span><span class="w"> </span><span class="n">string</span><span class="p">(</span><span class="s">"Ratio of Q10 conv and Q10 Scape"</span><span class="p">),</span><span class="w"> </span><span class="s">"Ratio"</span><span class="p">,</span><span class="w"> </span><span class="n">crange</span><span class="p">,</span><span class="w"> </span><span class="n">cmap</span><span class="p">)</span>
</code></pre></div>
<p><img alt="" src="../hdrtwlg.png"></p>
<p><img alt="" src="../yqwbetm.png"></p>
<hr>
<p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></div>

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