Merge pull request #9 from meggart/fix_compression

Make compression of netcdf and zarr discoverable in interface

Project.toml

@@ -1,7 +1,7 @@
 name = "YAXArrayBase"
 uuid = "90b8fcef-0c2d-428d-9c56-5f86629e9d14"
 authors = ["Fabian Gans <fgans@bgc-jena.mpg.de>"]
-version = "0.3.0"
+version = "0.3.1"
 
 [deps]
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"

src/datasets/netcdf.jl

@@ -32,6 +32,7 @@ end
 end
 writeblock!(v::NetCDFVariable, aout, r::AbstractUnitRange...) = NetCDF.open(a->writeblock!(a,aout,r...), v.filename, v.varname, mode=NC_WRITE)
 readblock!(v::NetCDFVariable, aout, r::AbstractUnitRange...) = NetCDF.open(a->readblock!(a,aout,r...), v.filename, v.varname)
+iscompressed(v::NetCDFVariable) = NetCDF.open(v->v.compress > 0, v.filename, v.varname)
 
 Base.size(v::NetCDFVariable) = v.size
 

src/datasets/zarr.jl

@@ -1,5 +1,5 @@
 using .Zarr: ZArray, ZGroup, zgroup, zcreate,
-to_zarrtype, zopen
+to_zarrtype, zopen, Compressor
 
 struct ZarrDataset
   g::ZGroup
@@ -42,3 +42,4 @@ push!(backendregex, r"(.zarr$)|(.zarr/$)"=>ZarrDataset)
 allow_parallel_write(::ZarrDataset) = true
 allow_missings(::ZarrDataset) = true
 to_dataset(g::ZGroup; kwargs...) = ZarrDataset(g)
+iscompressed(a::ZArray{<:Any,<:Any,<:Compressor}) = true

test/datasets.jl

@@ -16,6 +16,7 @@ vn = get_varnames(ds_nc)
 @test get_var_dims(ds_nc, "time_bnds") == ["bnds", "time"]
 @test get_var_attrs(ds_nc,"tas")["long_name"] == "air_temperature"
 h = get_var_handle(ds_nc, "tas")
+@test !YAXArrayBase.iscompressed(h)
 @test all(isapprox.(h[1:2,1:2], [215.893 217.168; 215.805 217.03]))
 @test allow_parallel_write(ds_nc) == false
 @test allow_missings(ds_nc) == false
@@ -31,6 +32,7 @@ vn = get_varnames(ds_zarr)
 @test get_var_dims(ds_zarr, "time_bnds") == ["bnds", "time"]
 @test get_var_attrs(ds_zarr,"psl")["long_name"] == "Sea Level Pressure"
 h = get_var_handle(ds_zarr, "psl")
+@test YAXArrayBase.iscompressed(h)
 @test all(isapprox.(h[1:2,1:2,1], [99360.8  99334.9; 99360.8  99335.4]))
 @test allow_parallel_write(ds_zarr) == true
 @test allow_missings(ds_zarr) == true