condaEnv_atac-pipe.yml

name: atac-pipe
channels:
  - bioconda
  - r
  - defaults
  - conda-forge
dependencies:
  - python=2.7
  - numpy=1.11.0
  - samtools=1.5
  - r=3.2.2
  - gawk=4.1
  - bowtie2=2.3.0
  - bedtools=2.26.0
  - picard=2.9.2
  - pandas=0.20.2
  - bioconductor-deseq=1.22.1
  - homer=4.9.1
  - seaborn=0.7.1
  - macs2=2.1.1
  - r-pheatmap=1.0.8
  - python-levenshtein
  - ucsc-bedsort
  - ucsc-bedgraphtobigwig
  - scikit-learn=0.17.1
  - pip:
      - matplotlib==2.0.0
      - pysam==0.11